View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2754_high_5 (Length: 343)

Name: NF2754_high_5
Description: NF2754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2754_high_5
NF2754_high_5
[»] chr6 (4 HSPs)
chr6 (74-327)||(20202855-20203108)
chr6 (74-327)||(22096878-22097131)
chr6 (21-74)||(20203199-20203252)
chr6 (21-74)||(22097222-22097275)


Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 74 - 327
Target Start/End: Complemental strand, 20203108 - 20202855
Alignment:
Q  74 gcatcattctacattgaaggagatgccctcacgtggtgccattggatgcactctaatgcttagcttcattcttgacctactattctccatgctcttgaac 173  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20203108 gcatcattctacatggaaggagatgccctcacgtggtgccattggatgcactctaatggttagcttcattcttgacctactattctccatgctcttgaac 20203009  T
Q  174 tgcctttttccccttcatactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaacttt 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20203008 tgcctttttccccttcatactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaacttt 20202909  T
Q  274 agcaaatcgcattattggccttcgcctacaatgttacttaagttgtttcatctc 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20202908 agcaaatcgcattattggccttcgcctacaatgttacttaagttgtttcatctc 20202855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 74 - 327
Target Start/End: Complemental strand, 22097131 - 22096878
Alignment:
Q  74 gcatcattctacattgaaggagatgccctcacgtggtgccattggatgcactctaatgcttagcttcattcttgacctactattctccatgctcttgaac 173  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22097131 gcatcattctacatggaaggagatgccctcacgtggtgccattggatgcactctaatggttagcttcattcttgacctactattctccatgctcttgaac 22097032  T
Q  174 tgcctttttccccttcatactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaacttt 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22097031 tgcctttttccccttcatactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaacttt 22096932  T
Q  274 agcaaatcgcattattggccttcgcctacaatgttacttaagttgtttcatctc 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22096931 agcaaatcgcattattggccttcgcctacaatgttacttaagttgtttcatctc 22096878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 20203252 - 20203199
Alignment:
Q  21 ctaagaacagtgaaattttttccaaacacattcattaaacttgatattcccatg 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20203252 ctaagaacagtgaaattttttccaaacacattcattaaacttgatattcccatg 20203199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 22097275 - 22097222
Alignment:
Q  21 ctaagaacagtgaaattttttccaaacacattcattaaacttgatattcccatg 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22097275 ctaagaacagtgaaattttttccaaacacattcattaaacttgatattcccatg 22097222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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