View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2754_high_9 (Length: 262)
Name: NF2754_high_9
Description: NF2754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2754_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 25259062 - 25259306
Alignment:
| Q |
1 |
gtgtaatggctacacaaatttccatctatggttcttaatttttggtctattctggttatcaattggcactggtggaattagaccttgcagtattccattc |
100 |
Q |
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| T |
25259062 |
gtgtaatggctacacaaatttccatctatggttcttaatttttggtctattctggttatcaattggcactggtggaattagaccttgcagtattccattc |
25259161 |
T |
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| Q |
101 |
gcagtcgaccaatttgatttgacaacttctgaaggaagacatggaagtagcagcttctatagtttgtactacacaacacaaacaatagtcatgttgataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25259162 |
gcagtcgaccaatttgatttgacaacttctgaaggaagacatggaagtagcagcttctatagtttgtactacacaacacagacaatagtcatgttgataa |
25259261 |
T |
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| Q |
201 |
accaaactcttttggtttatattgaggattctgttagttggacac |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25259262 |
accaaactcttttggtttatattgaggattctgttagttggacac |
25259306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 16696773 - 16696664
Alignment:
| Q |
50 |
ttctggttatcaattggcactggtggaattagaccttgcagtattccattcgcagtcgaccaatttgatttgacaacttctgaaggaagacatggaagta |
149 |
Q |
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||||||||| | || ||||| |||||||||| || ||||| ||||| |||||| |||||||||||||| ||||||| |||||| ||||| |||| | |
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| T |
16696773 |
ttctggttagccataggcacaggtggaattaatccatgcagcattcccttcgcaatcgaccaatttgatatgacaacagttgaaggtagacaaggaacaa |
16696674 |
T |
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| Q |
150 |
gcagcttcta |
159 |
Q |
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| T |
16696673 |
gaagcttcta |
16696664 |
T |
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