View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2754_low_13 (Length: 240)
Name: NF2754_low_13
Description: NF2754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2754_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 45758266 - 45758043
Alignment:
| Q |
1 |
ctatataactagaagggtnnnnnnncaacgtaagtaataaggaaatggtacaaaggaatggaaaaattcaaatacgtcaaaataaggaaatgatagcact |
100 |
Q |
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| T |
45758266 |
ctatataactagaagggtaaaaaaacaacgtaagtaataaggaaatggtacaaaggaatggaaaaattcaaatacatcaaaataaggaaatgatagcact |
45758167 |
T |
|
| Q |
101 |
tgtttaagaagtagccaattttattgccaaaataggtccgggaaagatggactaatgtacatacttggactatgttgtggtttttaatgtgacagagtat |
200 |
Q |
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| T |
45758166 |
tgtttaagaagtagccaattttattgccaaaataggtccgggaaagatggactaatgtacatacttggactatgttgtggtttttaatgtgacagagtat |
45758067 |
T |
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| Q |
201 |
catggattgtgacaacacccatgt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
45758066 |
catggattgtgacaacacccatgt |
45758043 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 6852685 - 6852741
Alignment:
| Q |
77 |
tcaaaataaggaaatgatagcacttgtttaagaagtagccaattttattgccaaaat |
133 |
Q |
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||||||||| ||||| |||||| || ||||||||||||||||| |||||||||||| |
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| T |
6852685 |
tcaaaataatgaaatcatagcaactgattaagaagtagccaattctattgccaaaat |
6852741 |
T |
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