View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2754_low_3 (Length: 484)

Name: NF2754_low_3
Description: NF2754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2754_low_3
NF2754_low_3
[»] chr3 (4 HSPs)
chr3 (13-272)||(3936070-3936326)
chr3 (122-269)||(52103419-52103564)
chr3 (207-267)||(2190370-2190430)
chr3 (182-268)||(3936682-3936768)
[»] chr2 (6 HSPs)
chr2 (270-469)||(34666399-34666597)
chr2 (116-265)||(15975436-15975585)
chr2 (147-269)||(42149562-42149684)
chr2 (129-269)||(15974709-15974849)
chr2 (155-270)||(40321117-40321232)
chr2 (139-271)||(40320239-40320371)
[»] chr5 (2 HSPs)
chr5 (126-269)||(31607256-31607399)
chr5 (118-269)||(31607956-31608107)
[»] chr7 (2 HSPs)
chr7 (116-269)||(3306652-3306805)
chr7 (129-271)||(3305922-3306064)
[»] chr6 (4 HSPs)
chr6 (116-269)||(17439865-17440018)
chr6 (129-271)||(17440604-17440746)
chr6 (116-256)||(20666758-20666898)
chr6 (185-256)||(20667461-20667532)
[»] chr1 (5 HSPs)
chr1 (116-270)||(30430342-30430494)
chr1 (122-196)||(10468749-10468823)
chr1 (188-271)||(30429387-30429470)
chr1 (182-256)||(36139704-36139778)
chr1 (126-238)||(36140637-36140748)
[»] chr4 (3 HSPs)
chr4 (188-269)||(27340743-27340824)
chr4 (155-269)||(17869644-17869758)
chr4 (182-269)||(27339716-27339803)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 3936326 - 3936070
Alignment:
Q  13 gcttcttcttcctctaatcttccttatgtctgcttcttctagaacggtcatggagatatagggccgccggcgtccggcggtgagaggaaaagagagaggc 112  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  3936326 gcttcttcttcctctaatcttctttatgtctgcttcttctagaacggtcgtggagatatagggccgccggcgtccggcagtgagaggaaaagggagaggc 3936227  T
Q  113 agctatcaacaatgaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcattt 212  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3936226 agctatcagcaatgaagataacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgtcatgtgtcattt 3936127  T
Q  213 atccatgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaactcatc 272  Q
    |||||||||||||||||||||||||| | |||   ||||||||||| |||||||||||||    
T  3936126 atccatgcattggagaggagtaaatggaggaa---taaatggagcagagatgaactcatc 3936070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 122 - 269
Target Start/End: Original strand, 52103419 - 52103564
Alignment:
Q  122 caatgaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgca 221  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||  |||| ||| | ||||||||| |||||    
T  52103419 caatgaagatgatgagaggaatcaaatgaattagtctctattttaagattttattattaacccttggattta--tttgacatatatcatttatctatgca 52103516  T
Q  222 ttggagaggagtaaatgaaagaatgttaaatggagcatagatgaactc 269  Q
    ||||| ||||||||||| | ||||||||||||||||| ||||||||||    
T  52103517 ttggaaaggagtaaatggaggaatgttaaatggagcaaagatgaactc 52103564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 2190430 - 2190370
Alignment:
Q  207 tcatttatccatgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaac 267  Q
    ||||||||||| |||||||| ||||||||||| | ||||||||||||||||| | ||||||    
T  2190430 tcatttatccaggcattggaaaggagtaaatggaggaatgttaaatggagcaaatatgaac 2190370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 3936682 - 3936768
Alignment:
Q  182 cccttggatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaact 268  Q
    ||||||||||  |||||||||  ||||| |||||  || ||| || |||| |||||| | ||||||||||||||||| |||||||||    
T  3936682 cccttggattggtttttgccacatgtcacttatctgtgaattcgaaaggattaaatggaggaatgttaaatggagcaaagatgaact 3936768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 9e-68; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 270 - 469
Target Start/End: Original strand, 34666399 - 34666597
Alignment:
Q  270 atcaacttgcgcatttttcaaaatagattaatgaaaaatacgatcaatttcaacacatcttttgatattcggagtctctgatatctcctttgtaactacg 369  Q
    ||||||||| ||||||||||||||| ||||||| |||  ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  34666399 atcaacttgtgcatttttcaaaataaattaatggaaatcacgatcaatttcaacgcatcttttgatat-cggagtctctgatatctcctttgtaactacg 34666497  T
Q  370 gagctttcactgttggagtgagaatcannnnnnngctccggtggaggcagtgttggtgtggtagttaccaaagcactaaattaagatgatgccacctttg 469  Q
    |||||||||||||||||| ||||||||       |||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  34666498 gagctttcactgttggagcgagaatcatttttttgctccgatggaggcagtgttggtgtggtagttaccagagcactgaattaagatgatgccacctttg 34666597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 116 - 265
Target Start/End: Original strand, 15975436 - 15975585
Alignment:
Q  116 tatcaacaatgaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatc 215  Q
    ||||| |||||||||||| ||||||||||| || ||||| ||||||||||||| ||||| || |||| |||||||||||||||||||||||||||| |||    
T  15975436 tatcagcaatgaagatgatgagaggaatcaaataaattaatctctattttaagattttattactagctcttggatttatttttgccatgtgtcattaatc 15975535  T
Q  216 catgcattggagaggagtaaatgaaagaatgttaaatggagcatagatga 265  Q
    ||||||||||| ||||||||||| | |||||| |||||||||| ||||||    
T  15975536 catgcattggaaaggagtaaatggaggaatgtaaaatggagcaaagatga 15975585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 147 - 269
Target Start/End: Original strand, 42149562 - 42149684
Alignment:
Q  147 atgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatgaaagaatg 246  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| |||||||||||||||||||| | ||||||||||| | |||||    
T  42149562 atgaattagtctctattttaagattttattattagcccttggatttatttttgacatatgtcatttatccatgcattgaaaaggagtaaatggaggaatg 42149661  T
Q  247 ttaaatggagcatagatgaactc 269  Q
    |||||||||||| ||||||||||    
T  42149662 ttaaatggagcaaagatgaactc 42149684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 269
Target Start/End: Complemental strand, 15974849 - 15974709
Alignment:
Q  129 gatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgcattggaga 228  Q
    ||||| ||||||||| || | |||| |||||  ||||||  ||||| | ||| || || ||| |||||||||||||||||||| |||||||||||| | |    
T  15974849 gatgatgagaggaataagttaaattggtctcagttttaacattttaatcttaacctttagatctatttttgccatgtgtcattaatccatgcattgaaaa 15974750  T
Q  229 ggagtaaatgaaagaatgttaaatggagcatagatgaactc 269  Q
     ||||||||||| |||||| |||||||||| ||||||||||    
T  15974749 tgagtaaatgaaggaatgtaaaatggagcaaagatgaactc 15974709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 155 - 270
Target Start/End: Original strand, 40321117 - 40321232
Alignment:
Q  155 gtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatgaaagaatgttaaatgg 254  Q
    |||||||| |||| | |||| | | ||||||||||||||||||| |||||||||||  ||| |||||||| | ||||||||||| |  || | |||||||    
T  40321117 gtctctatgttaaccatttaatttcagcccttggatttatttttaccatgtgtcatgcatctatgcattgaaaaggagtaaatggagcaaggctaaatgg 40321216  T
Q  255 agcatagatgaactca 270  Q
    |||| |||||||||||    
T  40321217 agcaaagatgaactca 40321232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 271
Target Start/End: Complemental strand, 40320371 - 40320239
Alignment:
Q  139 ggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatg 238  Q
    ||||| ||||| || ||| | ||| |||| |||||| | | ||||||| ||||||||||| |||||||||||  ||| |||||||| | |||| ||||||    
T  40320371 ggaataagatggataagtgtttatgttaaccttttaatttcagcccttagatttatttttaccatgtgtcatgcatctatgcattgaaaaggattaaatg 40320272  T
Q  239 aaagaatgttaaatggagcatagatgaactcat 271  Q
     |  || | ||||||||||| ||||||||||||    
T  40320271 gagcaaggctaaatggagcaaagatgaactcat 40320239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 126 - 269
Target Start/End: Complemental strand, 31607399 - 31607256
Alignment:
Q  126 gaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgcattgg 225  Q
    |||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||     
T  31607399 gaagatgatgagaggaatcaaatgaattagactctattttaagcttttattattagcccttggatttattttttccatgtgtcatttatccatgcattga 31607300  T
Q  226 agaggagtaaatgaaagaatgttaaatggagcatagatgaactc 269  Q
    | ||||||||||| | ||| ||||||||||||| ||||||||||    
T  31607299 aaaggagtaaatggaggaacgttaaatggagcaaagatgaactc 31607256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 118 - 269
Target Start/End: Original strand, 31607956 - 31608107
Alignment:
Q  118 tcaacaatgaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatcca 217  Q
    |||||||||||||||| ||||||||||| ||||||||| ||||| |||||||||||| ||||| || |||||||||||||| ||||||||||||||||||    
T  31607956 tcaacaatgaagatgatgagaggaatcaaatgaattaggctctactttaagcttttattattaacctttggatttattttttccatgtgtcatttatcca 31608055  T
Q  218 tgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaactc 269  Q
    ||||||| | || ||||| || | ||||||||||||||||| ||||||||||    
T  31608056 tgcattgaaaagaagtaattggaggaatgttaaatggagcaaagatgaactc 31608107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 116 - 269
Target Start/End: Original strand, 3306652 - 3306805
Alignment:
Q  116 tatcaacaatgaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatc 215  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| || |||||||| |||||||||||| ||| ||||||| |||    
T  3306652 tatcaacaatgaagatgatgagaggaatcaaatgaattaatctctattttaagcttttattactagcccttagatttatttttgtcatatgtcattaatc 3306751  T
Q  216 catgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaactc 269  Q
    ||||||||||| ||||||||||| || ||||| |||||||||| ||||||||||    
T  3306752 catgcattggaaaggagtaaatggaaaaatgtaaaatggagcaaagatgaactc 3306805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 129 - 271
Target Start/End: Complemental strand, 3306064 - 3305922
Alignment:
Q  129 gatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgcattggaga 228  Q
    ||||| ||||||||| || | |||| ||||| |||||||  ||||| | ||| || || ||| ||||||||| |||||||||| |||||||||||||| |    
T  3306064 gatgatgagaggaataagttaaattggtctcaattttaacattttaatcttaacctttagatctatttttgctatgtgtcattaatccatgcattggaaa 3305965  T
Q  229 ggagtaaatgaaagaatgttaaatggagcatagatgaactcat 271  Q
    | |||||||| | |||||| |||||||||| ||||||||||||    
T  3305964 gaagtaaatggaggaatgtaaaatggagcaaagatgaactcat 3305922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 116 - 269
Target Start/End: Complemental strand, 17440018 - 17439865
Alignment:
Q  116 tatcaacaatgaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatc 215  Q
    ||||| |||||||||||| ||||||||||| |||||||| ||||||||||| | ||||| || | ||||||||||||||||||||||||||||||| |||    
T  17440018 tatcagcaatgaagatgatgagaggaatcaaatgaattaatctctattttatgtttttattactggcccttggatttatttttgccatgtgtcattaatc 17439919  T
Q  216 catgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaactc 269  Q
    ||||||||||| ||||||||||| | |||||| |||||||| | | ||||||||    
T  17439918 catgcattggaaaggagtaaatggaggaatgtaaaatggagtaaatatgaactc 17439865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 129 - 271
Target Start/End: Original strand, 17440604 - 17440746
Alignment:
Q  129 gatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgcattggaga 228  Q
    ||||| ||||||||| || | |||| ||||| |||||||  ||||| | ||| || || ||| |||||||||||||||||||| |||||||||||||| |    
T  17440604 gatgatgagaggaataagttaaattggtctcaattttaacattttaatcttaacctttagatctatttttgccatgtgtcattaatccatgcattggaaa 17440703  T
Q  229 ggagtaaatgaaagaatgttaaatggagcatagatgaactcat 271  Q
    |||||||||| | |||||| |||||||||| |||| |||||||    
T  17440704 ggagtaaatggaggaatgtaaaatggagcaaagataaactcat 17440746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 116 - 256
Target Start/End: Complemental strand, 20666898 - 20666758
Alignment:
Q  116 tatcaacaatgaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatc 215  Q
    ||||||| | |||||||| ||||||||| ||||||| | | |||| |||||| |||||| ||| | || |||||||||| ||||||| || |||||||||    
T  20666898 tatcaacgaagaagatgatgagaggaattagatgaaatggcctctgttttaaccttttaatatcaacctttggatttatatttgccacgtatcatttatc 20666799  T
Q  216 catgcattggagaggagtaaatgaaagaatgttaaatggag 256  Q
    ||||||||||| ||||||| ||| | ||||| || ||||||    
T  20666798 catgcattggaaaggagtagatggaggaatgctatatggag 20666758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 20667461 - 20667532
Alignment:
Q  185 ttggatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatgaaagaatgttaaatggag 256  Q
    |||||||||| |||||||  |||||||||||||||||||||| ||||||||||| | ||||| |||||||||    
T  20667461 ttggatttatatttgccacatgtcatttatccatgcattggaaaggagtaaatggaggaatgctaaatggag 20667532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 116 - 270
Target Start/End: Original strand, 30430342 - 30430494
Alignment:
Q  116 tatcaacaatgaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatc 215  Q
    ||||||| | |||||||| ||||||||| |  |||| | | || |||||||| |||||| | ||| ||||| |||||||||||||||  |||||||||||    
T  30430342 tatcaacgaagaagatgatgagaggaatta--tgaaatggcctatattttaaacttttaatcttaaccctttgatttatttttgccacatgtcatttatc 30430439  T
Q  216 catgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaactca 270  Q
     |||||||||| ||||||||||| | ||||  ||||||||||| |||||||||||    
T  30430440 tatgcattggaaaggagtaaatggaggaatactaaatggagcaaagatgaactca 30430494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 10468823 - 10468749
Alignment:
Q  122 caatgaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttattt 196  Q
    |||||||||||| |||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  10468823 caatgaagatgatgagaggaatcaactgaattagtctctattttaagattttattattagcccttggatttattt 10468749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 30429470 - 30429387
Alignment:
Q  188 gatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaactcat 271  Q
    ||||||| |||||||  |||||||||||||||||||||| ||||| ||||| | ||||  ||||||||||| ||||||||||||    
T  30429470 gatttatctttgccacatgtcatttatccatgcattggaaaggagcaaatggaggaatactaaatggagcaaagatgaactcat 30429387  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 36139778 - 36139704
Alignment:
Q  182 cccttggatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatgaaagaatgttaaatggag 256  Q
    ||||||||||| |||||||||  ||||| ||||| ||| |||||| ||||||||||  | ||||| |||||||||    
T  36139778 cccttggatttctttttgccacatgtcacttatctatgtattggacaggagtaaattgaggaatggtaaatggag 36139704  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 36140637 - 36140748
Alignment:
Q  126 gaagatgacgagaggaatcagatgaattagtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgcattgg 225  Q
    |||||||| |||| |||| ||||||||| ||| | |||||||  ||||| | | | ||||||||||| ||||||| |  ||||  ||||||||| |||||    
T  36140637 gaagatgatgagaagaataagatgaattggtccc-attttaacattttaatctcaacccttggatttctttttgcaacatgtcgcttatccatgtattgg 36140735  T
Q  226 agaggagtaaatg 238  Q
    | |||||||||||    
T  36140736 aaaggagtaaatg 36140748  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 27340743 - 27340824
Alignment:
Q  188 gatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaactc 269  Q
    ||||||| |||||||  |||||||||||||||||||||| ||||||||||| | ||||  ||||||||||| ||||||||||    
T  27340743 gatttatctttgccacatgtcatttatccatgcattggaaaggagtaaatggaggaatactaaatggagcaaagatgaactc 27340824  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 269
Target Start/End: Complemental strand, 17869758 - 17869644
Alignment:
Q  155 gtctctattttaagcttttagtattagcccttggatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatgaaagaatgttaaatgg 254  Q
    |||||||| |||| | |||| | | ||||||||||||||||||| |||||||||||  ||| |||||||| | ||||||||||| |  || | |||||||    
T  17869758 gtctctatgttaaccatttaatttcagcccttggatttatttttaccatgtgtcatgcatctatgcattgaaaaggagtaaatggagcaaggctaaatgg 17869659  T
Q  255 agcatagatgaactc 269  Q
    |||| ||||||||||    
T  17869658 agcaaagatgaactc 17869644  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 269
Target Start/End: Complemental strand, 27339803 - 27339716
Alignment:
Q  182 cccttggatttatttttgccatgtgtcatttatccatgcattggagaggagtaaatgaaagaatgttaaatggagcatagatgaactc 269  Q
    ||||| ||||||||||| |||  | |||| |||| |||||||||| | ||||||||| ||||||  ||||||||||| ||||||||||    
T  27339803 ccctttgatttatttttaccacatatcatctatctatgcattggaaatgagtaaatggaagaatactaaatggagcaaagatgaactc 27339716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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