View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2754_low_6 (Length: 343)
Name: NF2754_low_6
Description: NF2754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2754_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 74 - 327
Target Start/End: Complemental strand, 20203108 - 20202855
Alignment:
| Q |
74 |
gcatcattctacattgaaggagatgccctcacgtggtgccattggatgcactctaatgcttagcttcattcttgacctactattctccatgctcttgaac |
173 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20203108 |
gcatcattctacatggaaggagatgccctcacgtggtgccattggatgcactctaatggttagcttcattcttgacctactattctccatgctcttgaac |
20203009 |
T |
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| Q |
174 |
tgcctttttccccttcatactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaacttt |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20203008 |
tgcctttttccccttcatactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaacttt |
20202909 |
T |
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| Q |
274 |
agcaaatcgcattattggccttcgcctacaatgttacttaagttgtttcatctc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20202908 |
agcaaatcgcattattggccttcgcctacaatgttacttaagttgtttcatctc |
20202855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 74 - 327
Target Start/End: Complemental strand, 22097131 - 22096878
Alignment:
| Q |
74 |
gcatcattctacattgaaggagatgccctcacgtggtgccattggatgcactctaatgcttagcttcattcttgacctactattctccatgctcttgaac |
173 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22097131 |
gcatcattctacatggaaggagatgccctcacgtggtgccattggatgcactctaatggttagcttcattcttgacctactattctccatgctcttgaac |
22097032 |
T |
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| Q |
174 |
tgcctttttccccttcatactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaacttt |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22097031 |
tgcctttttccccttcatactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaacttt |
22096932 |
T |
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| Q |
274 |
agcaaatcgcattattggccttcgcctacaatgttacttaagttgtttcatctc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22096931 |
agcaaatcgcattattggccttcgcctacaatgttacttaagttgtttcatctc |
22096878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 20203252 - 20203199
Alignment:
| Q |
21 |
ctaagaacagtgaaattttttccaaacacattcattaaacttgatattcccatg |
74 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20203252 |
ctaagaacagtgaaattttttccaaacacattcattaaacttgatattcccatg |
20203199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 22097275 - 22097222
Alignment:
| Q |
21 |
ctaagaacagtgaaattttttccaaacacattcattaaacttgatattcccatg |
74 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22097275 |
ctaagaacagtgaaattttttccaaacacattcattaaacttgatattcccatg |
22097222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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