View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2754_low_7 (Length: 319)

Name: NF2754_low_7
Description: NF2754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2754_low_7
NF2754_low_7
[»] chr2 (23 HSPs)
chr2 (64-306)||(13136654-13136906)
chr2 (68-198)||(43722904-43723035)
chr2 (60-198)||(6825974-6826114)
chr2 (63-199)||(5104952-5105086)
chr2 (60-198)||(3874482-3874630)
chr2 (117-198)||(13972732-13972813)
chr2 (98-198)||(10599951-10600051)
chr2 (123-198)||(5665830-5665905)
chr2 (1-76)||(13136964-13137039)
chr2 (19-76)||(6826168-6826225)
chr2 (129-198)||(38014636-38014705)
chr2 (25-76)||(5666058-5666109)
chr2 (129-199)||(31430569-31430639)
chr2 (19-76)||(3874684-3874741)
chr2 (117-198)||(16788389-16788469)
chr2 (19-75)||(5105124-5105180)
chr2 (19-75)||(43723098-43723154)
chr2 (60-119)||(13972656-13972717)
chr2 (129-198)||(25873203-25873272)
chr2 (25-76)||(13972551-13972602)
chr2 (129-198)||(25869835-25869904)
chr2 (129-174)||(25139971-25140016)
chr2 (158-198)||(40780658-40780698)
[»] chr5 (27 HSPs)
chr5 (60-198)||(30065562-30065702)
chr5 (60-176)||(2836702-2836819)
chr5 (116-196)||(39191333-39191413)
chr5 (60-198)||(28788252-28788401)
chr5 (60-198)||(7270241-7270377)
chr5 (68-177)||(18031731-18031850)
chr5 (60-174)||(4100284-4100413)
chr5 (117-176)||(32837105-32837164)
chr5 (117-176)||(37214788-37214847)
chr5 (60-198)||(40916739-40916889)
chr5 (117-175)||(22937974-22938032)
chr5 (19-76)||(30065756-30065813)
chr5 (117-198)||(43490793-43490874)
chr5 (117-200)||(21827959-21828043)
chr5 (117-198)||(21336660-21336742)
chr5 (19-76)||(4100173-4100230)
chr5 (129-198)||(14016967-14017036)
chr5 (59-164)||(2837526-2837641)
chr5 (60-126)||(33551415-33551482)
chr5 (25-76)||(33551536-33551587)
chr5 (129-199)||(17747616-17747686)
chr5 (25-76)||(7270431-7270482)
chr5 (25-76)||(18031912-18031963)
chr5 (22-76)||(17663965-17664019)
chr5 (149-198)||(25329456-25329505)
chr5 (122-198)||(28442105-28442181)
chr5 (24-76)||(18240150-18240202)
[»] chr7 (19 HSPs)
chr7 (60-198)||(4694723-4694871)
chr7 (60-198)||(45287989-45288138)
chr7 (60-199)||(9865494-9865643)
chr7 (116-198)||(45291392-45291474)
chr7 (117-198)||(4596843-4596924)
chr7 (117-198)||(20081559-20081640)
chr7 (60-198)||(9080376-9080525)
chr7 (117-198)||(17729973-17730054)
chr7 (117-199)||(8276011-8276093)
chr7 (19-76)||(4694925-4694982)
chr7 (19-76)||(9865383-9865440)
chr7 (117-177)||(10344637-10344697)
chr7 (25-76)||(17730217-17730268)
chr7 (22-76)||(9273779-9273833)
chr7 (25-76)||(9080579-9080630)
chr7 (117-198)||(9273953-9274034)
chr7 (217-300)||(22620863-22620946)
chr7 (122-198)||(4542074-4542150)
chr7 (122-198)||(10431386-10431462)
[»] chr1 (15 HSPs)
chr1 (60-198)||(21019228-21019367)
chr1 (60-198)||(2404722-2404870)
chr1 (60-198)||(21108245-21108393)
chr1 (19-76)||(41058953-41059010)
chr1 (60-198)||(42021721-42021871)
chr1 (117-199)||(41059152-41059235)
chr1 (29-76)||(21108144-21108191)
chr1 (129-199)||(45961638-45961708)
chr1 (19-76)||(2404924-2404981)
chr1 (129-197)||(27537144-27537212)
chr1 (117-176)||(29644227-29644286)
chr1 (25-76)||(21019122-21019173)
chr1 (129-198)||(2793299-2793368)
chr1 (161-198)||(49147113-49147150)
chr1 (60-92)||(41059064-41059096)
[»] chr4 (41 HSPs)
chr4 (60-199)||(19819949-19820089)
chr4 (60-199)||(27677817-27677967)
chr4 (116-199)||(53010376-53010459)
chr4 (60-198)||(27691885-27692025)
chr4 (60-198)||(15430616-15430766)
chr4 (60-198)||(15437230-15437380)
chr4 (60-198)||(44164001-44164142)
chr4 (60-198)||(19826701-19826850)
chr4 (117-198)||(24044976-24045057)
chr4 (60-198)||(52007292-52007431)
chr4 (117-198)||(3718336-3718417)
chr4 (117-177)||(40794213-40794273)
chr4 (117-176)||(14571048-14571107)
chr4 (68-198)||(35509201-35509320)
chr4 (117-198)||(12782106-12782187)
chr4 (19-76)||(27677706-27677763)
chr4 (117-177)||(21419000-21419060)
chr4 (129-199)||(29323978-29324048)
chr4 (19-76)||(24044792-24044849)
chr4 (19-76)||(27691774-27691831)
chr4 (129-198)||(44809835-44809904)
chr4 (25-76)||(19820143-19820194)
chr4 (25-76)||(21419202-21419253)
chr4 (25-76)||(35509379-35509430)
chr4 (25-76)||(52007187-52007238)
chr4 (117-198)||(27013229-27013311)
chr4 (19-76)||(15430505-15430562)
chr4 (19-76)||(15437119-15437176)
chr4 (19-76)||(44164196-44164253)
chr4 (129-193)||(34320775-34320839)
chr4 (25-76)||(3718538-3718589)
chr4 (117-176)||(5680491-5680550)
chr4 (25-76)||(19826904-19826955)
chr4 (122-198)||(15431164-15431240)
chr4 (122-198)||(15437778-15437854)
chr4 (29-76)||(12782318-12782365)
chr4 (25-76)||(40794416-40794467)
chr4 (147-198)||(49269735-49269786)
chr4 (60-94)||(24044903-24044937)
chr4 (122-198)||(3798720-3798796)
chr4 (24-76)||(8875418-8875470)
[»] chr3 (35 HSPs)
chr3 (60-198)||(10880776-10880924)
chr3 (60-199)||(29344624-29344774)
chr3 (60-198)||(53814971-53815120)
chr3 (60-198)||(34984602-34984758)
chr3 (68-198)||(41976321-41976461)
chr3 (117-200)||(16243164-16243247)
chr3 (81-178)||(43808898-43809003)
chr3 (117-205)||(54460360-54460448)
chr3 (59-198)||(20729336-20729477)
chr3 (19-76)||(34984491-34984548)
chr3 (19-76)||(41976493-41976550)
chr3 (117-190)||(54736769-54736842)
chr3 (117-197)||(9380012-9380092)
chr3 (117-176)||(16185575-16185634)
chr3 (117-176)||(35411699-35411758)
chr3 (117-198)||(3839790-3839874)
chr3 (121-198)||(19305470-19305547)
chr3 (19-76)||(31548753-31548810)
chr3 (117-176)||(31548573-31548632)
chr3 (60-122)||(6445513-6445577)
chr3 (129-198)||(19302295-19302364)
chr3 (25-76)||(16243374-16243425)
chr3 (19-73)||(29344513-29344567)
chr3 (122-198)||(10884018-10884094)
chr3 (122-198)||(23299477-23299553)
chr3 (24-76)||(3293591-3293643)
chr3 (25-76)||(3840016-3840067)
chr3 (60-123)||(54460460-54460525)
chr3 (122-198)||(538015-538091)
chr3 (122-198)||(6921890-6921966)
chr3 (19-76)||(10880978-10881035)
chr3 (60-94)||(16243286-16243320)
chr3 (60-97)||(28265112-28265149)
chr3 (60-92)||(3839930-3839962)
chr3 (158-198)||(49743785-49743825)
[»] scaffold0520 (2 HSPs)
scaffold0520 (60-198)||(4723-4880)
scaffold0520 (19-75)||(4631-4687)
[»] chr6 (10 HSPs)
chr6 (58-199)||(28666044-28666177)
chr6 (60-200)||(10289184-10289334)
chr6 (117-199)||(9953035-9953117)
chr6 (19-76)||(10289388-10289445)
chr6 (25-76)||(28665920-28665971)
chr6 (117-164)||(13004434-13004481)
chr6 (24-76)||(22561782-22561834)
chr6 (128-177)||(20181294-20181343)
chr6 (128-177)||(22154648-22154697)
chr6 (161-199)||(12987037-12987075)
[»] chr8 (13 HSPs)
chr8 (60-198)||(12582218-12582366)
chr8 (68-198)||(5981083-5981220)
chr8 (117-199)||(45156837-45156919)
chr8 (25-76)||(12582420-12582471)
chr8 (19-76)||(5980964-5981021)
chr8 (120-176)||(5540917-5540973)
chr8 (117-176)||(14420886-14420945)
chr8 (135-198)||(18826771-18826834)
chr8 (118-198)||(30640505-30640587)
chr8 (60-122)||(17895369-17895433)
chr8 (117-199)||(19792925-19793009)
chr8 (116-174)||(25228039-25228096)
chr8 (134-198)||(10663011-10663075)
[»] scaffold0757 (2 HSPs)
scaffold0757 (60-198)||(4563-4713)
scaffold0757 (25-76)||(4767-4818)
[»] scaffold0270 (3 HSPs)
scaffold0270 (60-198)||(911-1060)
scaffold0270 (117-174)||(4339-4396)
scaffold0270 (117-174)||(11469-11526)
[»] scaffold0005 (1 HSPs)
scaffold0005 (117-176)||(246269-246328)
[»] scaffold0015 (1 HSPs)
scaffold0015 (117-176)||(197264-197323)
[»] scaffold0381 (1 HSPs)
scaffold0381 (117-198)||(6472-6554)
[»] scaffold1993 (1 HSPs)
scaffold1993 (117-198)||(1045-1126)
[»] scaffold0080 (1 HSPs)
scaffold0080 (116-175)||(26277-26336)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 64 - 306
Target Start/End: Complemental strand, 13136906 - 13136654
Alignment:
Q  64 gtgtcacgtttttcagtaatcgtgacacgatgccttttt-cagcttcttcagttttttcttgct---------gcttaatcttgcttgtgaattcaaaaa 153  Q
    |||||| |||||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||         ||||||||||| ||||||| |||||||    
T  13136906 gtgtcatgtttttcagtaatcatgacacaatgctttttttcagcttcttcagttttttcttgcttttcttgctgcttaatcttgtttgtgaactcaaaaa 13136807  T
Q  154 tatcataaaaagactctaaaaataataaatgattgactgtcatcaggaaacatgtaatgtgaaaatgtaatgaatcaagatagttccattataataaaat 253  Q
    |||||||||| |||||||||||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||    
T  13136806 tatcataaaatgactctaaaaataacaaatgactgactgtcattaggaaacatgtaatatgaaaatgtaatgaatcaagataggtccatcataataaaat 13136707  T
Q  254 aggccatgttatattagatgaagtcgtgtttttagaaggatctagagtgatga 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13136706 aggccatgttatattagatgaagtcgtgtttttagaaggatctagattgatga 13136654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 43723035 - 43722904
Alignment:
Q  68 cacgtttttcagtaatcgtgacacgatgc-ctttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaaga 166  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43723035 cacgtttttcagtaatcgtgacacgatgctctttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaactcaaaaatatcataaaaaga 43722936  T
Q  167 ctctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||||  ||||||||||||||||||    
T  43722935 ctctaaaaataacgaatgattgactgtcatca 43722904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 6826114 - 6825974
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgccttttt--cagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatc 157  Q
    |||||||| ||||||||||||||||||||||||||||||||||  || ||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  6826114 aatcgtgttacgtttttcagtaatcgtgacacgatgcctttttttcatcttcttcagttttttcttgatgcttaatcttgcttgtgaactcaaaaatatc 6826015  T
Q  158 ataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||| |||| ||||  ||||||||||||||||||    
T  6826014 ataaaaagactttaaatataacgaatgattgactgtcatca 6825974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 63 - 199
Target Start/End: Complemental strand, 5105086 - 5104952
Alignment:
Q  63 cgtgtcacgtttttcagtaatcgtgacacgatgcc-tttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataa 161  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  5105086 cgtgtcacgtttttcagtaatcgtgacacgatcccctttttcagcttcttcagttttt-cttgctgcttaatcttgcttgtgaactcaaaaatatcataa 5104988  T
Q  162 aaagactctaaaaataataaatgattgactgtcatcag 199  Q
    ||| |||||||||  | | ||||| |||||||||||||    
T  5104987 aaaaactctaaaa--agtgaatgactgactgtcatcag 5104952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 3874630 - 3874482
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc-tttttcagcttcttcagttttttcttgct---------gcttaatcttgcttgtgaattca 149  Q
    ||||||| ||||||||||| |||||||||||||||||| |||||||| ||||||| ||||||||||||         ||||||||||| ||||||| |||    
T  3874630 aatcgtgacacgtttttcaataatcgtgacacgatgccctttttcagtttcttcaattttttcttgcttttcttgctgcttaatcttgtttgtgaactca 3874531  T
Q  150 aaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  3874530 aaaatatcctaaaaagactctaaaaataatgaatgactgactgtcatca 3874482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 13972732 - 13972813
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  13972732 ttttcttgctgcttaatcttgtttgtgaactcaaaaatatcataaaaagactctaaaaataacgaatgattgactgtcatca 13972813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 10600051 - 10599951
Alignment:
Q  98 tttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatc 197  Q
    ||||||||||| |||   ||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||| | ||||| |||||||||||    
T  10600051 tttttcagctttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagattctaaaaatagtgaatgactgactgtcatc 10599952  T
Q  198 a 198  Q
    |    
T  10599951 a 10599951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 5665905 - 5665830
Alignment:
Q  123 tgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  5665905 tgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgattgactgtcatca 5665830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 13137039 - 13136964
Alignment:
Q  1 attggtatactgcacatattcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    ||||||||||| ||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||    
T  13137039 attggtatactacacctattcttccttgtctaacaaatcacccaaattagggtttccataatcgtgtcacgttttt 13136964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 6826225 - 6826168
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  6826225 ttcttccttgtgtaacaaaccacccaaattagggtttccataattgtgtcacgttttt 6826168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 38014705 - 38014636
Alignment:
Q  129 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||||||||||||    
T  38014705 ttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 38014636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 5666109 - 5666058
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  5666109 cttgtgtaacaaaccacctaaattagggtttccataatcgtgtcacgttttt 5666058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 31430569 - 31430639
Alignment:
Q  129 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcag 199  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||  |||||| | |||||||||||    
T  31430569 ttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactaactgtcatcag 31430639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 3874741 - 3874684
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||| ||||||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  3874741 ttctgccttgtgtaacaaaccaccaaaattagggtttccataatcatgtcacgttttt 3874684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 16788469 - 16788389
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||| ||||||| |||||||||||| |||||| |||||| |||||| ||||||||||  |||||| ||||||||||||    
T  16788469 ttttcttgttgcttaagcttgcttgtgaactcaaaattatcat-aaaagattctaaaaatagcaaatgactgactgtcatca 16788389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 5105180 - 5105124
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgtttt 75  Q
    |||||||||||||||||||| ||| |||||| ||||||||||||||||  |||||||    
T  5105180 ttcttccttgtgtaacaaacaaccaaaattagggtttccataatcgtgctacgtttt 5105124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 43723154 - 43723098
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgtttt 75  Q
    |||| |||| ||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  43723154 ttctgccttctgtaacaaaccacccaaattagggttcccataattgtgtcacgtttt 43723098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 13972656 - 13972717
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt 119  Q
    |||||||||||||||| |||||||| ||||||||| ||  |||||||| |||||||||||||    
T  13972656 aatcgtgtcacgttttccagtaatcatgacacgatccccttttttcagtttcttcagttttt 13972717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 25873272 - 25873203
Alignment:
Q  129 ttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||| |||||||||||| |||||| |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  25873272 ttaaacttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 25873203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 13972551 - 13972602
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||| |||||| | |||||||||| |||||| ||||||    
T  13972551 cttgtgtaacaaaccacctaaattaggatttccataattgtgtcatgttttt 13972602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 25869904 - 25869835
Alignment:
Q  129 ttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||| ||| |||||||| |||||| |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  25869904 ttaaactttcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 25869835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 25139971 - 25140016
Alignment:
Q  129 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaa 174  Q
    |||| ||| |||||||| |||||||||||||||||| |||||||||    
T  25139971 ttaagcttacttgtgaactcaaaaatatcataaaaaaactctaaaa 25140016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 40780698 - 40780658
Alignment:
Q  158 ataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||||||||||||   ||||||||||||||||||    
T  40780698 ataaaaagactctaaaaatagcgaatgattgactgtcatca 40780658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 30065702 - 30065562
Alignment:
Q  60 aatcgtgtcacgtttttc-agtaatcgtgacacgatgcctttttca-gcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatc 157  Q
    |||||||||||||||||  ||||||||||||||||||||||||| | |||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30065702 aatcgtgtcacgtttttttagtaatcgtgacacgatgccttttttaagctttttcagttttttcttgttgcttaatcttgcttgtgaattcaaaaatatc 30065603  T
Q  158 ataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||||||||||||||||  ||||| ||| ||||||||    
T  30065602 ataaaaagactctaaaaataacgaatgaatgattgtcatca 30065562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 2836819 - 2836702
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatc 157  Q
    ||||||| ||||||||||||||||||||||||||| ||  |||||||| ||||||||||||| ||||||||||||  ||||||||||| |||||||||||    
T  2836819 aatcgtgacacgtttttcagtaatcgtgacacgattcccttttttcagtttcttcagttttt-cttgctgcttaagtttgcttgtgaactcaaaaatatc 2836721  T
Q  158 ataaaaagactctaaaaat 176  Q
    |||||||||||||||||||    
T  2836720 ataaaaagactctaaaaat 2836702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 39191413 - 39191333
Alignment:
Q  116 tttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcat 196  Q
    ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  39191413 tttttcttgctgcttaagcttgcttgtgaactcaaaagtatcataaaaagactctaaaaataacaaatgattgactgtcat 39191333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 28788252 - 28788401
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcctt--tttcagcttcttcagttttt---------tcttgctgcttaatcttgcttgtgaattc 148  Q
    ||||||| ||||||||||||||||| |||||||||||| |  |||||| |||||||| ||||         ||||||||||||| |||||||||||| |     
T  28788252 aatcgtgacacgtttttcagtaatcatgacacgatgccctcttttcagtttcttcagatttttcttgtttttcttgctgcttaagcttgcttgtgaacta 28788351  T
Q  149 aaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||||||    
T  28788352 aaaaatatcataaaaagactctaaaaatagcaaatgactgactgtcatca 28788401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 7270377 - 7270241
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc-tttttcagcttcttcagtttttt-cttgctgcttaatcttgcttgtgaattcaaaaatatc 157  Q
    ||||||| ||| ||||||| |||| ||||||||||||| |||||||| |||||||||||||| ||||    ||  ||||||||||||| |||||||||||    
T  7270377 aatcgtgacacatttttcaataatagtgacacgatgccctttttcagtttcttcagtttttttcttg----tttttcttgcttgtgaactcaaaaatatc 7270282  T
Q  158 ataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||||||||||||   |||||  |||||||||||    
T  7270281 ataaaaagactctaaaaatagcgaatgacagactgtcatca 7270241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 177
Target Start/End: Complemental strand, 18031850 - 18031731
Alignment:
Q  68 cacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattcaaaaatatc 157  Q
    ||||||||||||||||||||||||||| ||  |||||||| |||||||||||||        ||||||||||||| ||||||| |||| || ||||||||    
T  18031850 cacgtttttcagtaatcgtgacacgattccattttttcagtttcttcagtttttcttgcttttcttgctgcttaaacttgcttttgaactcgaaaatatc 18031751  T
Q  158 ataaaaagactctaaaaata 177  Q
    ||||||||||||||||||||    
T  18031750 ataaaaagactctaaaaata 18031731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 4100284 - 4100413
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgccttttt-------cagcttcttcagtttt--------ttcttgctgcttaatcttgcttgtga 144  Q
    ||||||||||||||||| ||||||||||||||||| |||||||       ||| ||||||||||||        |||||||||||||||||||| |||||    
T  4100284 aatcgtgtcacgtttttgagtaatcgtgacacgatccctttttttttcttcagtttcttcagttttccttgcttttcttgctgcttaatcttgcctgtga 4100383  T
Q  145 attcaaaaatatcataaaaagactctaaaa 174  Q
    | ||||||||||||||||||||||||||||    
T  4100384 actcaaaaatatcataaaaagactctaaaa 4100413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 32837164 - 32837105
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 176  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  32837164 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 32837105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 37214847 - 37214788
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 176  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  37214847 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 37214788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 40916739 - 40916889
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc-tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattcaa 150  Q
    ||||||| ||| ||||||||||||||||||||||| || |||||||| |||||| ||||||        ||||| ||||||| |||||||||||| ||||    
T  40916739 aatcgtgacacatttttcagtaatcgtgacacgatcccctttttcagtttcttcggtttttcttgcttttcttgttgcttaagcttgcttgtgaactcaa 40916838  T
Q  151 aaatatcat---aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||| ||   ||||||||||||||||||  |||||| ||||||||||||    
T  40916839 aaatatgataaaaaaaagactctaaaaatagcaaatgactgactgtcatca 40916889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 22937974 - 22938032
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaa 175  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  22937974 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaa 22938032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 30065813 - 30065756
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  30065813 ttcttccttgtgtaacaaaccacccaaattagggtttccataaccgtgtcacgttttt 30065756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 43490874 - 43490793
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||   ||||||  |||||||||||    
T  43490874 ttttcttgctgcttaagcttgtttgtgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacagactgtcatca 43490793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 21827959 - 21828043
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatcagg 200  Q
    |||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||   ||||| ||||||||||||||    
T  21827959 ttttcttgctgcttaagcttgcttgcgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatcagg 21828043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 21336660 - 21336742
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||| ||||||| |||||||||||| |||||||||| || |||||||||||||||||| | ||||| ||||||||||||    
T  21336660 ttttcttgttgcttaagcttgcttgtgaactcaaaaatataataaaaaagactctaaaaatagtgaatgactgactgtcatca 21336742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 4100173 - 4100230
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  4100173 ttcttccttgtgtaacaaaccaccaaaattagggtttgcataatcgtgtcacgttttt 4100230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 14016967 - 14017036
Alignment:
Q  129 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||||||||||||    
T  14016967 ttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 14017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 2837526 - 2837641
Alignment:
Q  59 taatcgtgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagtt--------ttttcttgctgcttaatcttgcttgtgaattc 148  Q
    |||||||| ||||||||||||||||||||||| ||| ||  || ||||| ||||||||||        |||| ||||||||||| |||||||||||| ||    
T  2837526 taatcgtgacacgtttttcagtaatcgtgacatgattccctttcttcagtttcttcagtttttcttgcttttattgctgcttaagcttgcttgtgaactc 2837625  T
Q  149 aaaaatatcataaaaa 164  Q
     |||||||||||||||    
T  2837626 caaaatatcataaaaa 2837641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 33551482 - 33551415
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgat-gcctttttcagcttcttcagttttttcttgct 126  Q
    ||||||| |||||||||||||||||||||||||||  |||||||||  ||||| ||||||||||||||    
T  33551482 aatcgtgacacgtttttcagtaatcgtgacacgatcccctttttcactttctttagttttttcttgct 33551415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 33551587 - 33551536
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||| |||||    
T  33551587 cttgtgtaacaaaccacccaaattagggttttcataatcgtgtcactttttt 33551536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 17747686 - 17747616
Alignment:
Q  129 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcag 199  Q
    |||| ||| ||| |||| |||||| ||||||||||||||||||||||||  |||||| |||||||||||||    
T  17747686 ttaagctttcttatgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatcag 17747616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 7270482 - 7270431
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||| ||||||  ||||| |||||||||||||||||||    
T  7270482 cttgtgtaacaaaccacctaaattagagtttctataatcgtgtcacgttttt 7270431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 18031963 - 18031912
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||  |||||| |||||||| |||||||||||||||||    
T  18031963 cttgtgtaacaaaccactgaaattagggtttccacaatcgtgtcacgttttt 18031912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 17664019 - 17663965
Alignment:
Q  22 ttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||||||||||||| |||||    ||| |||||||||||||    
T  17664019 ttccttgtgtaacaaaccacccaaattagggtttatgaaattgtgtcacgttttt 17663965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 25329505 - 25329456
Alignment:
Q  149 aaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||||||||||| ||||||||||||   ||||| ||||||||||||    
T  25329505 aaaaatatcataaaaaaactctaaaaatagcgaatgactgactgtcatca 25329456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 28442105 - 28442181
Alignment:
Q  122 ttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||| |||| |||||||||||| || |||||||||| |||| ||| ||||||||| | ||||| ||||||||||||    
T  28442105 ttgctgtttaaacttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 28442181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 18240150 - 18240202
Alignment:
Q  24 ccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||| ||||||||  ||||||||||| |||||||| ||||||||||| |||||    
T  18240150 ccttatgtaacaagtcacccaaattagggtttccagaatcgtgtcacattttt 18240202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 4694871 - 4694723
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgccttttt-cagcttcttcagttttttctt---------gctgcttaatcttgcttgtgaattca 149  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||         |||||||||||||||||||||| |||    
T  4694871 aatcgtgtcacgtttttcagtaatcgtgacacgatgccttttttcagcttcttcagttttttcttacttttcttgctgcttaatcttgcttgtgaactca 4694772  T
Q  150 aaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||| ||||||||||||||||| |||||| ||||| ||||||    
T  4694771 aaaatatcatagaaagactctaaaaataacaaatgactgactttcatca 4694723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 45287989 - 45288138
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcctt--tttcagcttcttcagttttt---------tcttgctgcttaatcttgcttgtgaattc 148  Q
    ||||||| |||||||||||||||| |||||||||||||||  |||||| |||||||| ||||         ||||||||||||| |||||||||||| ||    
T  45287989 aatcgtgacacgtttttcagtaattgtgacacgatgccttcttttcagtttcttcagctttttcttgtttttcttgctgcttaagcttgcttgtgaactc 45288088  T
Q  149 aaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  45288089 aaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 45288138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 199
Target Start/End: Original strand, 9865494 - 9865643
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattca 149  Q
    ||||||||||||||||||| ||||||||||||||| |   |||||||  |||||||||||||        |||||||||||||||||||||||||| |||    
T  9865494 aatcgtgtcacgtttttcaataatcgtgacacgatcctcttttttcattttcttcagtttttcttgcttttcttgctgcttaatcttgcttgtgaactca 9865593  T
Q  150 aaaatatcataaaaagactctaaaaataataaatgattgactgtcatcag 199  Q
    ||||||||||||||||||||||||||||   ||||| |||||||||||||    
T  9865594 aaaatatcataaaaagactctaaaaatagcgaatgactgactgtcatcag 9865643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 45291392 - 45291474
Alignment:
Q  116 tttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  45291392 tttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 45291474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 4596843 - 4596924
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||| ||||||||||| |||||||  ||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  4596843 ttttcttgttgcttaatctttcttgtgagctcaaaaatatcataaaaagactctaaaaataacgaatgattgactgtcatca 4596924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 20081559 - 20081640
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||| | ||||| ||||||||||||    
T  20081559 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaacactctaaaaatagtgaatgactgactgtcatca 20081640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 9080525 - 9080376
Alignment:
Q  60 aatcgtgtcacgtttttcagt-aatcgtgacacgatgcc--tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattc 148  Q
    ||||||| ||||||||||||| ||| |||||||||||||  ||||| || |||||||||||||        ||||||||||||| |||||||||||| ||    
T  9080525 aatcgtgacacgtttttcagttaatagtgacacgatgccctttttttagtttcttcagtttttcttggttttcttgctgcttaagcttgcttgtgaactc 9080426  T
Q  149 aaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||  ||||||||||||||||||||||  ||||| | ||||||||||    
T  9080425 aaaaattacataaaaagactctaaaaataacgaatgactaactgtcatca 9080376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 17730054 - 17729973
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| | || || ||||||||||||    
T  17730054 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaggactctaaaaatagtgaaagactgactgtcatca 17729973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 8276093 - 8276011
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcag 199  Q
    |||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||   |||||  ||||||||||||    
T  8276093 ttttcttgctgcttgagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatatggaatgacagactgtcatcag 8276011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 4694982 - 4694925
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    ||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||    
T  4694982 ttcttccttgtgtaagaaaccacccaaattagggtttccataattgtgtcacgttttt 4694925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 9865383 - 9865440
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||    
T  9865383 ttcttccttgtgtaacaaaccaccaaaattagggtttccataatcgtgtcacattttt 9865440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 10344697 - 10344637
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaata 177  Q
    |||||||||||||||| |||||||||||| |||||||| |||||| |||||||||||||||    
T  10344697 ttttcttgctgcttaagcttgcttgtgaactcaaaaatttcataagaagactctaaaaata 10344637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 17730268 - 17730217
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  17730268 cttgtgtaacaaaccacctaaattagggtttccataatcgtgtcacgttttt 17730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 9273779 - 9273833
Alignment:
Q  22 ttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  9273779 ttccttgtgtaacaaaccactcaaattagggtttccgtaatcgtgtcacgttttt 9273833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 9080630 - 9080579
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    ||||||||||||||||| ||||||| |||||||||||| |||||||||||||    
T  9080630 cttgtgtaacaaaccacacaaattagggtttccataattgtgtcacgttttt 9080579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 9273953 - 9274034
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||| ||||||| |||||||||||| || ||||||||||||||||||| | |||||   ||||||  |||||||||||    
T  9273953 ttttcttggtgcttaagcttgcttgtgaactccaaaatatcataaaaagactttgaaaatgtgaaatgacggactgtcatca 9274034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 300
Target Start/End: Complemental strand, 22620946 - 22620863
Alignment:
Q  217 aatgtaatgaatcaagatagttccattataataaaataggccatgttatattagatga--agtcgtgtttttagaaggatctagag 300  Q
    |||||||||||| ||||||| ||||||| |||| ||||| ||  ||||||||||| ||  |||| |||||||||||||||||||||    
T  22620946 aatgtaatgaattaagataggtccattagaatataatagccc--gttatattagaggatgagtcatgtttttagaaggatctagag 22620863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 4542150 - 4542074
Alignment:
Q  122 ttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaa-gactctaaaaataataaatgattgactgtcatca 198  Q
    |||||| |||| |||||||||||| |||||| |||||| |||| ||| ||||||||| | ||||| ||||||||||||    
T  4542150 ttgctgtttaaacttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 4542074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 10431462 - 10431386
Alignment:
Q  122 ttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaa-gactctaaaaataataaatgattgactgtcatca 198  Q
    |||||| |||| |||||||||||| |||||| |||||| |||| ||| ||||||||| | ||||| ||||||||||||    
T  10431462 ttgctgtttaaacttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 10431386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 21019228 - 21019367
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatc 157  Q
    ||||||| ||||||||||||||||||||||||||||||  ||||| || |||||||||||||||||||||||||| |||| ||| ||| |||||||||||    
T  21019228 aatcgtgacacgtttttcagtaatcgtgacacgatgccctttttttagtttcttcagttttttcttgctgcttaagcttggttgcgaactcaaaaatatc 21019327  T
Q  158 ataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    || |||||||||||||||||   ||||| ||||||||||||    
T  21019328 at-aaaagactctaaaaatagcgaatgactgactgtcatca 21019367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 2404870 - 2404722
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgccttttt-cagcttcttcagtttt---------ttcttgctgcttaatcttgcttgtgaattca 149  Q
    |||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||         ||||||||||||||||||||||||||| |||    
T  2404870 aatcatgtcacgtttttcagaaattgtgacacgatgccttttttcagcttcttcagttttatcttgcttttcttgctgcttaatcttgcttgtgaactca 2404771  T
Q  150 aaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||| ||||||||||||||||||||   ||||| ||||||||||||    
T  2404770 aaaatattataaaaagactctaaaaatagcgaatgactgactgtcatca 2404722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 21108245 - 21108393
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattca 149  Q
    ||||||| ||| ||||||| ||||||||||||||| ||  |||||||| |||||||||||||        |||||| |||||||||||||| ||| ||||    
T  21108245 aatcgtgacacatttttcaataatcgtgacacgatccccttttttcagtttcttcagtttttcttgcttttcttgcagcttaatcttgcttttgagttca 21108344  T
Q  150 aaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||||||| ||||||||||||| |   ||||| ||||||||||||    
T  21108345 aaaatatcataagaagactctaaaaagagcgaatgactgactgtcatca 21108393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 41058953 - 41059010
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  41058953 ttcttccttgtgtaacaaaccaccaaaattagggtttccataatcgtgtcacgttttt 41059010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 42021871 - 42021721
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcctt--tttcagcttcttcagttttttc----------ttgctgcttaatcttgcttgtgaatt 147  Q
    ||||||| ||| |||||||||||||||||||||||||| |  |||||| ||||||| ||||||           ||||||||||| |||||||||||| |    
T  42021871 aatcgtgacacatttttcagtaatcgtgacacgatgccctcttttcagtttcttcaatttttttcttgcttttattgctgcttaaacttgcttgtgaact 42021772  T
Q  148 caaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||  ||||| ||||||||||||||||||||   ||||||||||||||||||    
T  42021771 cagtaatattataaaaagactctaaaaatagcgaatgattgactgtcatca 42021721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 41059152 - 41059235
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatcag 199  Q
    |||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||   ||||| |||||||||||||    
T  41059152 ttttcttgctgcttaagcttgcttgcgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatcag 41059235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 21108144 - 21108191
Alignment:
Q  29 tgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21108144 tgtaacaaaccacccaaattagggtttccataatcgtgtcacgttttt 21108191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 45961638 - 45961708
Alignment:
Q  129 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcag 199  Q
    |||| |||||||||||| |||||| |||||||| |||||||||||||||  |||||| |||||||||||||    
T  45961638 ttaagcttgcttgtgaactcaaaattatcataacaagactctaaaaatagcaaatgactgactgtcatcag 45961708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 2404981 - 2404924
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||| ||||||||||||||| ||| |||||| ||||||||||||||||||||||||||    
T  2404981 ttctgccttgtgtaacaaacaaccgaaattagggtttccataatcgtgtcacgttttt 2404924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 27537144 - 27537212
Alignment:
Q  129 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatc 197  Q
    |||| |||||||||||| |||||| ||||||||||||||| ||||||||  |||||| |||||||||||    
T  27537144 ttaagcttgcttgtgaactcaaaattatcataaaaagactataaaaatagcaaatgactgactgtcatc 27537212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 29644227 - 29644286
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 176  Q
    |||| |||||||||||  ||||||||||| ||||||||||||||||||||||||| ||||    
T  29644227 tttttttgctgcttaagtttgcttgtgaactcaaaaatatcataaaaagactctataaat 29644286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 21019122 - 21019173
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||| ||||||||| || |||||||||||||||||||| |||||    
T  21019122 cttgtgtaacaacccacccaaactagggtttccataatcgtgtcacattttt 21019173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 2793368 - 2793299
Alignment:
Q  129 ttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||| |||||||||||| |||||| |||||| |||||||||||||||||| | || || ||||||||||||    
T  2793368 ttaaacttgcttgtgaactcaaaa-tatcattaaaaagactctaaaaatagtgaacgactgactgtcatca 2793299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 49147150 - 49147113
Alignment:
Q  161 aaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  49147150 aaaagactctaaaaatagtgaatgattgactgtcatca 49147113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 41059064 - 41059096
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacg 92  Q
    ||||||| |||||||||||||||||||||||||    
T  41059064 aatcgtgacacgtttttcagtaatcgtgacacg 41059096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 60 - 199
Target Start/End: Complemental strand, 19820089 - 19819949
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc-tttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaa-tatc 157  Q
    ||||||| ||||||||||||||||||||||||||| || ||||| || ||||||||||||| |||||| |||||||||||||||||| ||||||| ||||    
T  19820089 aatcgtgacacgtttttcagtaatcgtgacacgatccccttttttagtttcttcagttttt-cttgctacttaatcttgcttgtgaactcaaaaaatatc 19819991  T
Q  158 ataaaaagactctaaaaataataaatgattgactgtcatcag 199  Q
    ||||||||||| ||||||||   ||||| |||||||||||||    
T  19819990 ataaaaagactttaaaaatagcgaatgactgactgtcatcag 19819949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 60 - 199
Target Start/End: Original strand, 27677817 - 27677967
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagtttttt--------cttgctgcttaatcttgcttgtgaattca 149  Q
    ||||||||||||||||||||||||||||||||| | ||  |||||||| ||||||||||||||        ||||||||||||||||| ||||||| |||    
T  27677817 aatcgtgtcacgtttttcagtaatcgtgacacggtccccttttttcagtttcttcagttttttttgcttttcttgctgcttaatcttgattgtgaactca 27677916  T
Q  150 aaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatcag 199  Q
    |||||||||| |||||||||||||||||| | ||| | |||||||||||||    
T  27677917 aaaatatcataaaaaagactctaaaaatagtgaataactgactgtcatcag 27677967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 53010376 - 53010459
Alignment:
Q  116 tttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcag 199  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  53010376 tttttcttgctgcttaatcttacttgtgaactcaaaaatatcataaaaagactctaaaaataatgaatgactgactatcatcag 53010459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 27691885 - 27692025
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatc 157  Q
    |||||||||||||||||||||||||||||||| || ||  |||||||| || |||    |||||||||||||||||||||||||||||||||||||||||    
T  27691885 aatcgtgtcacgtttttcagtaatcgtgacacaatccccttttttcagttt-ttcttgcttttcttgctgcttaatcttgcttgtgaattcaaaaatatc 27691983  T
Q  158 at-aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
     | |||||||||||||||||| | ||||| | | ||||||||    
T  27691984 gtaaaaaagactctaaaaatagtgaatgactaattgtcatca 27692025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 15430616 - 15430766
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc---tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattc 148  Q
    |||||||||||||||||||||||| |||||||||| ||   |||||||| |||| ||||||||        ||||||||||||| |||||||||||| ||    
T  15430616 aatcgtgtcacgtttttcagtaattgtgacacgatccccgttttttcagtttctccagtttttcttgcttttcttgctgcttaagcttgcttgtgaactc 15430715  T
Q  149 aaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||| ||||||||||| |||||||  ||||| ||||||||||||    
T  15430716 aaaaatatcataaaaaagactctgaaaataacgaatgactgactgtcatca 15430766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 15437230 - 15437380
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc---tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattc 148  Q
    |||||||||||||||||||||||| |||||||||| ||   |||||||| |||| ||||||||        ||||||||||||| |||||||||||| ||    
T  15437230 aatcgtgtcacgtttttcagtaattgtgacacgatccccgttttttcagtttctccagtttttcttgcttttcttgctgcttaagcttgcttgtgaactc 15437329  T
Q  149 aaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||| ||||||||||| |||||||  ||||| ||||||||||||    
T  15437330 aaaaatatcataaaaaagactctgaaaataacgaatgactgactgtcatca 15437380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 44164142 - 44164001
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc-----tttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaat 154  Q
    ||||||||||||||||||||||||||||||||||| ||     |||||   ||||||     ||||||||||||||||||||||||||||| ||||||||    
T  44164142 aatcgtgtcacgtttttcagtaatcgtgacacgatccccccttttttttcccttcttgc---ttttcttgctgcttaatcttgcttgtgaactcaaaaat 44164046  T
Q  155 atcata-aaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||| |||||||| |||||||| | ||||| ||||||||||||    
T  44164045 atcataaaaaagactttaaaaatagtgaatgactgactgtcatca 44164001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 19826850 - 19826701
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattca 149  Q
    ||||||| ||||||||||||||||||||||||||| ||  |||||||| |||||||||||||        ||||| ||||||||||| |||||||| |||    
T  19826850 aatcgtgacacgtttttcagtaatcgtgacacgatccccttttttcagtttcttcagtttttcttgcttttcttgttgcttaatcttacttgtgaactca 19826751  T
Q  150 aaaa-tatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||| | ||||||||||||||||||||||   ||||| ||||||||||||    
T  19826750 aaaaatttcataaaaagactctaaaaatagcgaatgactgactgtcatca 19826701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 24044976 - 24045057
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||  ||||| ||||||||||||    
T  24044976 ttttcttgctgcttaatcttgtttgtgaactcaaaaatatcaaaaaaagactctaaaaataacgaatgactgactgtcatca 24045057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 52007292 - 52007431
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcctttt--tcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatc 157  Q
    ||||||| ||||||||| ||| ||||||||| ||| || |||  |||| |||||| | ||||||||||||||||| ||||||| |||| |||| ||||||    
T  52007292 aatcgtgacacgttttttagttatcgtgacatgattccctttcttcagtttcttc-gatttttcttgctgcttaagcttgcttttgaactcaacaatatc 52007390  T
Q  158 ataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||||||||||||   ||||| ||||||||||||    
T  52007391 ataaaaagactctaaaaatagcgaatgactgactgtcatca 52007431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 3718417 - 3718336
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||||| |||||||||||| | ||||| ||||||||||||    
T  3718417 ttttcttgttgcttaagcttgcttgtgaactcaaaaatatcataaaaatactctaaaaatagtgaatgagtgactgtcatca 3718336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 40794273 - 40794213
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaata 177  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  40794273 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaata 40794213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 14571107 - 14571048
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 176  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  14571107 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 14571048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 35509320 - 35509201
Alignment:
Q  68 cacgtttttcagtaatcgtgacacgatgcctttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagac 167  Q
    ||||||||||||||||||||||||||| ||        |||||||||||||| |||| |||||||||||||||||||| |||||||||||||| |||||     
T  35509320 cacgtttttcagtaatcgtgacacgatccc--------cttcttcagttttt-cttgttgcttaatcttgcttgtgaactcaaaaatatcatataaaga- 35509231  T
Q  168 tctaaaaataataaatgattgactgtcatca 198  Q
     ||||||||||  ||||| ||||||| ||||    
T  35509230 -ctaaaaataacgaatgactgactgttatca 35509201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 12782187 - 12782106
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||||||||||| ||||||||| || ||||||||||||||||| |||||||||||||   ||||| ||||||||||||    
T  12782187 ttttcttgctgcttaagcttgcttgtaaactcaaaaatatcataaaatgactctaaaaatagcgaatgactgactgtcatca 12782106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 27677706 - 27677763
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  27677706 ttcttccttgtgtaacaaaccaccaaaattagggtttccataatcgtgtcacgttttt 27677763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 21419060 - 21419000
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaata 177  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||    
T  21419060 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagacactaaaaata 21419000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 29324048 - 29323978
Alignment:
Q  129 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcag 199  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||  |||||| |||||||||||||    
T  29324048 ttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatcag 29323978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 24044792 - 24044849
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||    
T  24044792 ttcttccttgtgtaacaaactaccaaaattagggtttccataatcgtgtcacgttttt 24044849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 27691774 - 27691831
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  27691774 ttcttccttgtgtaacaaaccaccaaaattagggttttcataatcgtgtcacgttttt 27691831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 44809835 - 44809904
Alignment:
Q  129 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||||||||||||    
T  44809835 ttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 44809904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 19820194 - 19820143
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  19820194 cttgtgtaacaaaccaccaaaattagggtttccataatcgtgtcacgttttt 19820143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 21419253 - 21419202
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  21419253 cttgtgtaacaaaccacctaaattagggtttccataatcgtgtcacgttttt 21419202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 35509430 - 35509379
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  35509430 cttgtgtaacaaaccacccaaattagggtttccttaatcgtgtcacgttttt 35509379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 52007187 - 52007238
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  52007187 cttgtgtaacaaaccaccaaaattagggtttccataatcgtgtcacgttttt 52007238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 27013311 - 27013229
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcata-aaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||| ||||||| ||||| |||||| |||||||||||||| |||||||||||||||||   ||||| ||||||||||||    
T  27013311 ttttcttgttgcttaagcttgcctgtgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 27013229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 15430505 - 15430562
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    ||||||||||||||| |||||||| |||||| |||||||||||| |||||||||||||    
T  15430505 ttcttccttgtgtaaaaaaccaccaaaattatggtttccataattgtgtcacgttttt 15430562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 15437119 - 15437176
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    ||||||||||||||| |||||||| |||||| |||||||||||| |||||||||||||    
T  15437119 ttcttccttgtgtaaaaaaccaccaaaattatggtttccataattgtgtcacgttttt 15437176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 44164253 - 44164196
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||||||| |||||    
T  44164253 ttcttccttgtgtaacaaaccactaaaattagggtttccataatcgtgtcacattttt 44164196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 34320775 - 34320839
Alignment:
Q  129 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgt 193  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||  |||||| |||||||    
T  34320775 ttaagcttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgt 34320839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 3718589 - 3718538
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||| |||||| |||||||||||||||||||| |||||    
T  3718589 cttgtgtaacaaaccacctaaattagggtttccataatcgtgtcacattttt 3718538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 5680550 - 5680491
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 176  Q
    |||||||| || |||| ||||||| |||| ||||||||||||||||||||||||||||||    
T  5680550 ttttcttgttgtttaagcttgcttatgaactcaaaaatatcataaaaagactctaaaaat 5680491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 19826955 - 19826904
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||||||||    
T  19826955 cttgtgtaacaaaccacaaaaattagggtttccataatcgtgtcacgttttt 19826904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 15431240 - 15431164
Alignment:
Q  122 ttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||| |||| |||||||||||| |||||| |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  15431240 ttgctgtttaaacttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 15431164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 15437854 - 15437778
Alignment:
Q  122 ttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||| |||| |||||||||||| |||||| |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  15437854 ttgctgtttaaacttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 15437778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 12782365 - 12782318
Alignment:
Q  29 tgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||| ||| |||||| ||||||||||||||||||||||||||    
T  12782365 tgtaacaaacaacctaaattagggtttccataatcgtgtcacgttttt 12782318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 40794467 - 40794416
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||| ||||||||||| |||||| ||||||||||||| ||||||||||||    
T  40794467 cttgtgcaacaaaccacctaaattagggtttccataatcttgtcacgttttt 40794416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 49269786 - 49269735
Alignment:
Q  147 tcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||||||||||||| |||||||||||   |||||| ||||||||||||    
T  49269786 tcaaaaatatcataaaaaaactctaaaaatgtaaaatgactgactgtcatca 49269735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 24044903 - 24044937
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgat 94  Q
    ||||||||||| |||||||||||||||||||||||    
T  24044903 aatcgtgtcacatttttcagtaatcgtgacacgat 24044937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 3798720 - 3798796
Alignment:
Q  122 ttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||| |||| |||||||||||| || |||||||||| |||| ||| ||||||||| | ||||| ||||||||||||    
T  3798720 ttgctgtttaaacttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 3798796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 8875418 - 8875470
Alignment:
Q  24 ccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    ||||||||||||||| |||  ||||| | |||||| |||||||||||||||||    
T  8875418 ccttgtgtaacaaacaacctgaattaggatttccaaaatcgtgtcacgttttt 8875470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 10880924 - 10880776
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgccttttt-cagcttcttcagtttt---------ttcttgctgcttaatcttgcttgtgaattca 149  Q
    |||||||||||||||||||  |||||||||||||||||||||| |||||||||||  |||         ||||||||||||||||||||||||||| |||    
T  10880924 aatcgtgtcacgtttttcataaatcgtgacacgatgccttttttcagcttcttcaactttatcttgcttttcttgctgcttaatcttgcttgtgaactca 10880825  T
Q  150 aaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||||||||||||||||||||  |||| | ||||||||||||    
T  10880824 aaaatatcataaaaagactctaaaaatagcaaataactgactgtcatca 10880776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 60 - 199
Target Start/End: Original strand, 29344624 - 29344774
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattca 149  Q
    ||||||||||||||||||| ||||||||||||||| ||  |||||||| ||||||| |||||        |||||||||||||||||||||||||| |||    
T  29344624 aatcgtgtcacgtttttcaataatcgtgacacgatccccttttttcagtttcttcaatttttcttgcttttcttgctgcttaatcttgcttgtgaactca 29344723  T
Q  150 aaaatatcataa-aaagactctaaaaataataaatgattgactgtcatcag 199  Q
    |||||||||||| |||||||||||||||| | ||||| |||||||||||||    
T  29344724 aaaatatcataagaaagactctaaaaatagtgaatgactgactgtcatcag 29344774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 53815120 - 53814971
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcctt--tttcagcttcttcagttttttcttg---------ctgcttaatcttgcttgtgaattc 148  Q
    ||||||| |||||||||||||||| |||||||||||||||  |||||| |||||||| |||||||||         |||||||| |||||||||||| ||    
T  53815120 aatcgtgacacgtttttcagtaattgtgacacgatgccttcttttcagtttcttcagctttttcttgtttttcttgctgcttaagcttgcttgtgaactc 53815021  T
Q  149 aaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  53815020 aaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 53814971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 34984602 - 34984758
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgccttttt-cagcttcttcagtttttt------------------cttgctgcttaatcttgctt 140  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||                  |||| |||||||||||||||    
T  34984602 aatcgtgtcacgtttttcagtaatcgtgacacgatgccttttttcagcttct-cagttttttgtttcttttcttgcttttcttgttgcttaatcttgctt 34984700  T
Q  141 gtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||| ||||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  34984701 gtgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatca 34984758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 41976461 - 41976321
Alignment:
Q  68 cacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattcaaaaatatc 157  Q
    ||||||||||||||||||||||||||| ||  |||||||| |||||||||||||        |||||||| ||||||||||||||||| ||||||||||     
T  41976461 cacgtttttcagtaatcgtgacacgatccccttttttcagtttcttcagtttttgttgcttttcttgctgtttaatcttgcttgtgaactcaaaaatatt 41976362  T
Q  158 ataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||| ||||||||||||   ||||| ||||||||||||    
T  41976361 ataaaaacactctaaaaatagcgaatgactgactgtcatca 41976321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 16243247 - 16243164
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcagg 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||||| ||| ||||||||||    
T  16243247 ttttcttgctgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgattgtcatcagg 16243164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 43809003 - 43808898
Alignment:
Q  81 aatcgtgacacgatgcctttttc-agcttcttcagtttttt-------cttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaa 172  Q
    ||||||||||||||||||||||  |||||||||| ||||||       ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43809003 aatcgtgacacgatgcctttttttagcttcttcattttttttgcttttcttgctgcttaatcttgcttgtgaactcaaaaatatcataaaaagactctaa 43808904  T
Q  173 aaataa 178  Q
    ||||||    
T  43808903 aaataa 43808898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 54460448 - 54460360
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcaggaaaca 205  Q
    |||||||| |||||||  ||||||||||| ||||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||||    
T  54460448 ttttcttgttgcttaagattgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatcagtaaaca 54460360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 198
Target Start/End: Original strand, 20729336 - 20729477
Alignment:
Q  59 taatcgtgtcacgtttttcagtaatcgtgacacgatgc-cttt-ttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatat 156  Q
    |||||||| ||||||||||||| ||||||||| ||| | |||| ||||| |||||| | ||||||||||||||||| |||||||||||| | ||||||||    
T  20729336 taatcgtgacacgtttttcagttatcgtgacatgattcactttcttcagtttcttc-gatttttcttgctgcttaagcttgcttgtgaactaaaaaatat 20729434  T
Q  157 cat-aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||| ||||| ||||||||||||   ||||| ||||||||||||    
T  20729435 cataaaaaaaactctaaaaatagcgaatgactgactgtcatca 20729477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 34984491 - 34984548
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  34984491 ttcttccttgtgtaacaaaccacccaaattagggttttcataatcgtgtcacgttttt 34984548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 41976550 - 41976493
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  41976550 ttcttccttgtgtaacaaaccacccaaattagggttttcataatcgtgtcacgttttt 41976493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 54736769 - 54736842
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgac 190  Q
    |||||||| ||||||| |||||||||||| |||||| |||||||||||||||||||||||| | ||||||||||    
T  54736769 ttttcttgttgcttaagcttgcttgtgaactcaaaagtatcataaaaagactctaaaaatagtgaatgattgac 54736842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 9380092 - 9380012
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatc 197  Q
    |||||||  ||||||| |||||||||||| |||||||||||||||||||||||||||||||   ||||| |||||||||||    
T  9380092 ttttcttattgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgactgtcatc 9380012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 16185575 - 16185634
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 176  Q
    |||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||    
T  16185575 ttttcttgctgcttaagcttgtttgtgaactcaaaaatatcataaaaagactctaaaaat 16185634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 35411758 - 35411699
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 176  Q
    ||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  35411758 ttttcttgctgcttaagtttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 35411699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 3839874 - 3839790
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcat---aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||||||||||| |||||||||||| |||||||||||||   ||||| |||||||||||| | ||||| ||||||||||||    
T  3839874 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcattaaaaaaaaactctaaaaatagtgaatgactgactgtcatca 3839790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 19305470 - 19305547
Alignment:
Q  121 cttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||  ||||||| || ||||||||    
T  19305470 cttgctgtttaagcttgcttgtgaactcaaaaatattataaaaagactctaaaaatatgaaatgatggattgtcatca 19305547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 31548810 - 31548753
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  31548810 ttctgccttgtgtaacaaaccaccaaaattagggtttccataatcgtgtcacgttttt 31548753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 31548632 - 31548573
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 176  Q
    ||||||| |||||||| |||| ||||||| ||||||||||||||||||||||||||||||    
T  31548632 ttttcttactgcttaagcttggttgtgaactcaaaaatatcataaaaagactctaaaaat 31548573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 6445513 - 6445577
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttttct 122  Q
    ||||||| ||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||    
T  6445513 aatcgtgacacgtttttcagtaatcgtgacacgatgccctcttttcagtttcttcagttttttct 6445577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 19302295 - 19302364
Alignment:
Q  129 ttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||  ||||||  |||| ||||||    
T  19302295 ttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatatgaaatgacggactatcatca 19302364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 16243425 - 16243374
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    ||||||||||||||||||||||||| || |||||||||||||||| ||||||    
T  16243425 cttgtgtaacaaaccacccaaattaggggttccataatcgtgtcatgttttt 16243374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 29344513 - 29344567
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgtt 73  Q
    ||||||||||||||||||||| || |||||| ||||||||||||| |||||||||    
T  29344513 ttcttccttgtgtaacaaacctccaaaattagggtttccataatcatgtcacgtt 29344567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 10884094 - 10884018
Alignment:
Q  122 ttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||| |||| |||||||||||| |||||| |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  10884094 ttgctgtttaaacttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 10884018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 23299477 - 23299553
Alignment:
Q  122 ttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||| |||| |||||||||||| |||||| |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  23299477 ttgctgtttaaacttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 23299553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 3293591 - 3293643
Alignment:
Q  24 ccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||| ||||||||||||||||||| |||||||  |||||||||||||||||    
T  3293591 ccttgtataacaaaccacccaaattagggtttcctgaatcgtgtcacgttttt 3293643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 3840067 - 3840016
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||| | | |||| ||||||||||||||||||||||||||    
T  3840067 cttgtgtaacaaaccatctacattagggtttccataatcgtgtcacgttttt 3840016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 54460525 - 54460460
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttttctt 123  Q
    ||||||| |||| |||| ||||||||||||||||||||   ||||||| |||||||||||||||||    
T  54460525 aatcgtgacacgctttttagtaatcgtgacacgatgcccacttttcagtttcttcagttttttctt 54460460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 538091 - 538015
Alignment:
Q  122 ttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||| |||| |||| ||||||| |||||| |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  538091 ttgctgtttaaacttgtttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 538015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 6921966 - 6921890
Alignment:
Q  122 ttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||| |||| |||||||||||| |||||| |||||| |||||| ||||||||||| | ||||| ||||||||||||    
T  6921966 ttgctgtttaaacttgcttgtgaactcaaaa-tatcatgaaaaaggctctaaaaatagtgaatgactgactgtcatca 6921890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 10881035 - 10880978
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||| |||||| |||||||| ||  |||||| ||||||||||||||||||||||||||    
T  10881035 ttctgccttgtttaacaaacaactgaaattagggtttccataatcgtgtcacgttttt 10880978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 94
Target Start/End: Complemental strand, 16243320 - 16243286
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgat 94  Q
    ||||||| |||||||||||||||||||||||||||    
T  16243320 aatcgtgacacgtttttcagtaatcgtgacacgat 16243286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 28265149 - 28265112
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc 97  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  28265149 aatcgtgacacatttttcagtaatcgtgacacgatgcc 28265112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 3839962 - 3839930
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacg 92  Q
    ||||||| |||||||||||||||||||||||||    
T  3839962 aatcgtgacacgtttttcagtaatcgtgacacg 3839930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 49743785 - 49743825
Alignment:
Q  158 ataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||||||||||||||||  ||||| ||||||||||||    
T  49743785 ataaaaagactctaaaaataactaatgactgactgtcatca 49743825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 4723 - 4880
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc-tttttcagcttcttcagttttttc------------------ttgctgcttaatcttgctt 140  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||                  |||||||||||||||| ||    
T  4723 aatcgtgtcacgtttttcagtaatcgtgacacgatgccttttttcagcttcttcagttttttcttgcttttctttctttttttgctgcttaatcttgttt 4822  T
Q  141 gtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||| ||||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  4823 gtgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatca 4880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 4631 - 4687
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgtttt 75  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||    
T  4631 ttcttccttgtgtaacaaaccacccaaattagggtttctataatcgtgtcacatttt 4687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 199
Target Start/End: Original strand, 28666044 - 28666177
Alignment:
Q  58 ataatcgtgtcacgtttttcagtaatcgtgacacgatgcctttttcagcttcttcagttttttcttgctgcttaatcttgcttgtgaattcaaaaatatc 157  Q
    ||||||||| ||||||||||||| ||||||||| ||| || |||       |||||||||| ||||||||||||| |||||||||||| |||||||||||    
T  28666044 ataatcgtgacacgtttttcagttatcgtgacatgattcccttt-------cttcagtttt-tcttgctgcttaagcttgcttgtgaactcaaaaatatc 28666135  T
Q  158 ataaaaagactctaaaaataataaatgattgactgtcatcag 199  Q
    |||||||||||||||||||||  ||||| |||||||||||||    
T  28666136 ataaaaagactctaaaaataacgaatgactgactgtcatcag 28666177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 60 - 200
Target Start/End: Complemental strand, 10289334 - 10289184
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattca 149  Q
    ||||||||||||||||||||||||| ||||||||| ||  |||||||| |||||| ||||||        ||||| |||||||||||||||||||| |||    
T  10289334 aatcgtgtcacgtttttcagtaatcttgacacgatccccttttttcagtttcttcggtttttcttgcttttcttgttgcttaatcttgcttgtgaactca 10289235  T
Q  150 aaaatatcataaaaagactctaaaaataataaatgattgactgtcatcagg 200  Q
    ||||||||||||||||||||||||||||   ||||| | ||||||||||||    
T  10289234 aaaatatcataaaaagactctaaaaatagcgaatgacttactgtcatcagg 10289184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 9953117 - 9953035
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcag 199  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||   ||||||  ||||||||||||    
T  9953117 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacagactgtcatcag 9953035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 10289445 - 10289388
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  10289445 ttcttccttgtgtaacaaaccaccaaaattagggtttccataatcgtgtcacgttttt 10289388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 28665920 - 28665971
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  28665920 cttgtgtaacaaaccacctaaattagggtttccataatcgtgtcacgttttt 28665971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 13004481 - 13004434
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaa 164  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  13004481 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaa 13004434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 22561782 - 22561834
Alignment:
Q  24 ccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||||||||||||||||| |||||||| ||| ||| |||||||||    
T  22561782 ccttgtgtaacaaaccacccaaattagggtttccaaaattgtgccacgttttt 22561834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 20181343 - 20181294
Alignment:
Q  128 cttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaata 177  Q
    ||||| |||||||||||| |||||||||||| |||| |||||||||||||    
T  20181343 cttaagcttgcttgtgaactcaaaaatatcacaaaaggactctaaaaata 20181294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 22154648 - 22154697
Alignment:
Q  128 cttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaata 177  Q
    ||||| |||||||||||| |||||||||||| |||| |||||||||||||    
T  22154648 cttaagcttgcttgtgaactcaaaaatatcacaaaaggactctaaaaata 22154697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 12987037 - 12987075
Alignment:
Q  161 aaaagactctaaaaataataaatgattgactgtcatcag 199  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  12987037 aaaagaccctaaaaataatgaatgattgactgtcatcag 12987075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 12582366 - 12582218
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt--------tcttgctgcttaatcttgcttgtgaattca 149  Q
    ||||||| ||||||||||| ||||||||||||||| ||  |||||||| |||||||||||||        |||| ||||||||||||||||||||| |||    
T  12582366 aatcgtgacacgtttttcaataatcgtgacacgatccccttttttcagtttcttcagtttttcttgcttttctttctgcttaatcttgcttgtgaactca 12582267  T
Q  150 aaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||||||||||||||||||||   ||||||||| | ||||||    
T  12582266 aaaatatcataaaaagactctaaaaatagcgaatgattgattttcatca 12582218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 5981083 - 5981220
Alignment:
Q  68 cacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttt-----tcttgctgcttaatcttgcttgtgaattcaaaaatatcata 160  Q
    |||||||||||||||| |||||||||| ||  ||||| || |||||||||||||     | || || ||||| |||||||||||| ||||||||||||||    
T  5981083 cacgtttttcagtaattgtgacacgattccctttttttagtttcttcagtttttcttgcttttcctacttaaacttgcttgtgaactcaaaaatatcata 5981182  T
Q  161 aaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||||||||   ||||||  |||||||||||    
T  5981183 aaaagactctaaaaatgtgaaatgacggactgtcatca 5981220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 45156837 - 45156919
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatcag 199  Q
    ||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||   ||||||  |||||||||||    
T  45156837 ttttcttgctgctaaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaatatagaatgataaactgtcatcag 45156919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 12582471 - 12582420
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12582471 cttgtgtaacaaaccacccaaattagggtttccataatcgtgtcacgttttt 12582420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 5980964 - 5981021
Alignment:
Q  19 ttcttccttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  5980964 ttcttccttgtgaaacaaaccacccaaattagggtttccataatcgtgtcatgttttt 5981021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 5540917 - 5540973
Alignment:
Q  120 tcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 176  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||    
T  5540917 tcttgctgcttatgcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 5540973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 14420945 - 14420886
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 176  Q
    |||||||| ||||||| |||||||||||| | ||||||||||||||||||||||||||||    
T  14420945 ttttcttgttgcttaagcttgcttgtgaactaaaaaatatcataaaaagactctaaaaat 14420886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 18826771 - 18826834
Alignment:
Q  135 ttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||| |||||| ||||||||||||||||||||||||  |||||| ||||||||||||    
T  18826771 ttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 18826834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 30640587 - 30640505
Alignment:
Q  118 tttcttgctgcttaatcttgcttgtgaattcaaaaatatcata--aaaagactctaaaaataataaatgattgactgtcatca 198  Q
    ||||||||||||||| |||||||||||| |||||| |||||||  |||||| ||| |||||| | ||||||||||||||||||    
T  30640587 tttcttgctgcttaagcttgcttgtgaactcaaaagtatcataaaaaaagattcttaaaatagtgaatgattgactgtcatca 30640505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 17895369 - 17895433
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcc--tttttcagcttcttcagttttttct 122  Q
    ||||||| ||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||    
T  17895369 aatcgtgacacgtttttcagtaatcgtgacacgatgccctcttttcagtttcttcagttttttct 17895433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 19793009 - 19792925
Alignment:
Q  117 ttttcttgctgcttaatctt-gcttgtgaattcaaaaatatcata-aaaagactctaaaaataataaatgattgactgtcatcag 199  Q
    |||||||| || |||||||| ||||||||| |||||||||||||| ||||||||||||||||| | ||||   ||||||||||||    
T  19793009 ttttcttgttgtttaatctttgcttgtgaactcaaaaatatcataaaaaagactctaaaaatagtgaatggccgactgtcatcag 19792925  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 25228096 - 25228039
Alignment:
Q  116 tttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaa 174  Q
    ||||||||||| ||| | |||||||||||| ||||||||||||| ||||||||||||||    
T  25228096 tttttcttgcttcttgagcttgcttgtgaactcaaaaatatcat-aaaagactctaaaa 25228039  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 10663075 - 10663011
Alignment:
Q  134 cttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||||||| |||| | |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  10663075 cttgcttgtgaactcaaca-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 10663011  T

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Target: scaffold0757 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 4713 - 4563
Alignment:
Q  60 aatcgtgtcacgttttt-cagtaatcgtgacacgatgcc--tttttcagcttcttcagttttttcttg---------ctgcttaatcttgcttgtgaatt 147  Q
    ||||||| ||||||||| || ||||||||||||||||||  ||||| || ||||||||||||||||||         |||||||| |||||||||||| |    
T  4713 aatcgtgacacgttttttcaataatcgtgacacgatgcccttttttaagtttcttcagttttttcttgattttcttgctgcttaagcttgcttgtgaact 4614  T
Q  148 caaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  4613 caaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 4563  T

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Target: scaffold0757; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 4818 - 4767
Alignment:
Q  25 cttgtgtaacaaaccacccaaattaaggtttccataatcgtgtcacgttttt 76  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  4818 cttgtgtaataaaccacccaaattagggtttccataatcgtgtcacgttttt 4767  T

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Target: scaffold0270 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 911 - 1060
Alignment:
Q  60 aatcgtgtcacgtttttcagtaatcgtgacacgatgcctt--tttcagcttcttcagtttttt---------cttgctgcttaatcttgcttgtgaattc 148  Q
    ||||||| ||| |||||||||||||||||||||||||| |  |||||| ||||||||||||||         |||||||||||| |||||||||||| ||    
T  911 aatcgtgacacatttttcagtaatcgtgacacgatgccctcttttcagtttcttcagttttttcttgcttttcttgctgcttaagcttgcttgtgaactc 1010  T
Q  149 aaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||||||||||| ||||||||| ||   ||||| ||||||||||||    
T  1011 aaaaatatcataaaaatactctaaaagtagcgaatgactgactgtcatca 1060  T

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Target: scaffold0270; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 4339 - 4396
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaa 174  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  4339 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaa 4396  T

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Target: scaffold0270; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 11469 - 11526
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaa 174  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  11469 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaa 11526  T

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Target: scaffold0005 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 246269 - 246328
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 176  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  246269 ttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 246328  T

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Target: scaffold0015 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 197323 - 197264
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaat 176  Q
    |||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||    
T  197323 ttttcttgctgcttatgcttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 197264  T

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Target: scaffold0381 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 6472 - 6554
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcat-aaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||| ||||||| ||||| |||||| ||||||||||||| ||||||||||||||||||   ||||| ||||||||||||    
T  6472 ttttcttgttgcttaagcttgcctgtgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 6554  T

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Target: scaffold1993 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 1126 - 1045
Alignment:
Q  117 ttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaataataaatgattgactgtcatca 198  Q
    |||||||| ||||||| ||| ||| |||| || |||||||||||||||||||||||||||   |||||| ||||||||||||    
T  1126 ttttcttggtgcttaagcttccttatgaactccaaaatatcataaaaagactctaaaaatgtgaaatgactgactgtcatca 1045  T

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Target: scaffold0080 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 26336 - 26277
Alignment:
Q  116 tttttcttgctgcttaatcttgcttgtgaattcaaaaatatcataaaaagactctaaaaa 175  Q
    |||||| |||||||||   ||||||||||| |||||||||||||||||||||||||||||    
T  26336 tttttcatgctgcttatgtttgcttgtgaactcaaaaatatcataaaaagactctaaaaa 26277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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