View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2755_high_1 (Length: 743)

Name: NF2755_high_1
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2755_high_1
NF2755_high_1
[»] chr1 (16 HSPs)
chr1 (18-426)||(4872550-4872958)
chr1 (420-588)||(4877533-4877702)
chr1 (625-733)||(4877690-4877798)
chr1 (93-149)||(6326689-6326745)
chr1 (93-150)||(14508749-14508806)
chr1 (94-138)||(12535423-12535467)
chr1 (93-149)||(28239162-28239218)
chr1 (94-149)||(12532934-12532989)
chr1 (93-136)||(28231589-28231632)
chr1 (562-612)||(670434-670484)
chr1 (680-732)||(2288345-2288395)
chr1 (93-138)||(28326411-28326456)
chr1 (94-160)||(12540654-12540720)
chr1 (573-618)||(28326870-28326916)
chr1 (412-462)||(47569542-47569592)
chr1 (93-138)||(47569252-47569297)
[»] chr3 (3 HSPs)
chr3 (219-277)||(47924738-47924796)
chr3 (540-618)||(47923009-47923090)
chr3 (92-144)||(47924856-47924908)
[»] chr5 (1 HSPs)
chr5 (93-150)||(1717979-1718036)
[»] chr2 (2 HSPs)
chr2 (93-150)||(9066378-9066435)
chr2 (93-134)||(9068561-9068602)


Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 4872550 - 4872958
Alignment:
Q  18 acatcaagcctatgatttttattctgaaatgactgctaagaatatcagctttggttctactatatatcgtaatctatctaatctatggctattgcatcct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4872550 acatcaagcctatgatttttattctgaaatgactgctaagaatatcagctgtggttctactatatatcgtaatctatctaatctatggctattgcatcct 4872649  T
Q  118 cggtcaatttaaacaagcaatcgccttctttaggcaatttgggccagagccaccactttacatccttccctgtccaagttttaatgttgcccttgcctct 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4872650 cggtcaatttaaacaagcaatcaccttctttaggcaatttgggccagagccaccactttacatccttccctgtccaagttttaatgttgcccttgcctct 4872749  T
Q  218 gcttttgttactgatggagagtttaaagatgctaaaactgtagttgctgtgatggtaaaacctaacgttgctagttatcattcaatcattgatgaactat 317  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4872750 gcttttgttactgatggagaggttaaagatgctaaaactgtagttgctgtgatggtaaaacctaacgttgctaggtatcattcaatcattgatgaactat 4872849  T
Q  318 acaaaggtcaaagagttagtaagattgcaaaaatcatggaaactttgctacttaacaaactttccattggacaaccctattacatttactcttgaactat 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4872850 acaaaggtcaaagagttagtaagattgcaaaaatcatggaaactttgctatttaacaaactttccattggacaaccatattacatttactcttgaactat 4872949  T
Q  418 ttaaagttg 426  Q
    |||||||||    
T  4872950 ttaaagttg 4872958  T

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Target: chr1; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 420 - 588
Target Start/End: Original strand, 4877533 - 4877702
Alignment:
Q  420 aaagttggcttgtttggtgaagcatcgaagttaccaaaagacagcggtggctctcataccataacttgctgagcaactttgcacgctctctccataagct 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4877533 aaagttggcttgtttggtgaagcatcgaagttaccaaaagacagcggtggctctcataccataacttgctgagcaactttgcacgctctctccataagct 4877632  T
Q  520 atggaaataaggatcggaacttgtttgttcgcgga-ttgattgctagaggtctattagattacatgcttt 588  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4877633 atggaaataaggatcggaacttgtttgttcgcggatttgattgctagaggtctattagattacatgcttt 4877702  T

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Target: chr1; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 625 - 733
Target Start/End: Original strand, 4877690 - 4877798
Alignment:
Q  625 gattacatgctttctagtttgttaaataaggcaaatatgtccttcaaattaacagatacctatgtttcttcttttatgctttttgattaagcttttgatt 724  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4877690 gattacatgctttctagtttgttaaataaggcaaatatgtccttcaaattaacagatacctatgtttcttcttttatgctttttgattaagcttttgatt 4877789  T
Q  725 atgcctatg 733  Q
    |||||||||    
T  4877790 atgcctatg 4877798  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 6326745 - 6326689
Alignment:
Q  93 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 149  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  6326745 atctaatctatggctattgcatcctcggtcaatttgaacaagcaattgccttgttta 6326689  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 14508806 - 14508749
Alignment:
Q  93 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 150  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||    
T  14508806 atctaatctatggttattgcatcgtcggtcaatttaaacaagcaattgccttgtttag 14508749  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 12535467 - 12535423
Alignment:
Q  94 tctaatctatggctattgcatcctcggtcaatttaaacaagcaat 138  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  12535467 tctaatctatggctattgcatcaccggtcaatttaaacaagcaat 12535423  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 28239162 - 28239218
Alignment:
Q  93 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 149  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||||| | ||||||||    
T  28239162 atctagtctatggttattgcatcctcggtcaatttaaacaggcaattgacttcttta 28239218  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 12532989 - 12532934
Alignment:
Q  94 tctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 149  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||| ||||| ||||    
T  12532989 tctaatctatggctattacatcaacggtcaatttaaacaagcaattgccttgttta 12532934  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 28231589 - 28231632
Alignment:
Q  93 atctaatctatggctattgcatcctcggtcaatttaaacaagca 136  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  28231589 atctaatctatggttattgcatcctcggtcaatttaaagaagca 28231632  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 562 - 612
Target Start/End: Complemental strand, 670484 - 670434
Alignment:
Q  562 ctagaggtctattagattacatgctttttggtttgctaattaaagaactat 612  Q
    |||||||||||||||||||||||||||   |||| ||||||||||||||||    
T  670484 ctagaggtctattagattacatgctttccagttttctaattaaagaactat 670434  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 680 - 732
Target Start/End: Complemental strand, 2288395 - 2288345
Alignment:
Q  680 atacctatgtttcttcttttatgctttttgattaagcttttgattatgcctat 732  Q
    |||||||||||||||  ||||||||||||||||||||  ||||||||||||||    
T  2288395 atacctatgtttcttgatttatgctttttgattaagc--ttgattatgcctat 2288345  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 28326411 - 28326456
Alignment:
Q  93 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 138  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  28326411 atctaatctttggctattgtatcatcggtcaatttaaacaagcaat 28326456  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 12540654 - 12540720
Alignment:
Q  94 tctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttaggcaatttggg 160  Q
    |||| |||||||||||||||||   ||||||||||| |||||||| ||||| |||||  ||||||||    
T  12540654 tctagtctatggctattgcatcactggtcaatttaagcaagcaattgccttgtttagagaatttggg 12540720  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 573 - 618
Target Start/End: Original strand, 28326870 - 28326916
Alignment:
Q  573 ttagattacatgctttttg-gtttgctaattaaagaactatgctttt 618  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||    
T  28326870 ttagattacatgcttttttagtttgctaattaaaggactatgctttt 28326916  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 412 - 462
Target Start/End: Original strand, 47569542 - 47569592
Alignment:
Q  412 aactatttaaagttggcttgtttggtgaagcatcgaagttaccaaaagaca 462  Q
    ||||||||||||| ||||||||||||||||||| || |||| | |||||||    
T  47569542 aactatttaaagtgggcttgtttggtgaagcattgacgttatccaaagaca 47569592  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 47569252 - 47569297
Alignment:
Q  93 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 138  Q
    |||||| |||||| ||||||||||| |||||||| |||||||||||    
T  47569252 atctaacctatggttattgcatcctgggtcaattcaaacaagcaat 47569297  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 47924796 - 47924738
Alignment:
Q  219 cttttgttactgatggagagtttaaagatgctaaaactgtagttgctgtgatggtaaaa 277  Q
    |||| |||||||| |||||| |||||||||||||||||||||| |||||||||||||||    
T  47924796 ctttagttactgaaggagaggttaaagatgctaaaactgtagtggctgtgatggtaaaa 47924738  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 540 - 618
Target Start/End: Complemental strand, 47923090 - 47923009
Alignment:
Q  540 ttgtttgttcgcggattgattgctagaggtctatta---gattacatgctttttggtttgctaattaaagaactatgctttt 618  Q
    ||||| ||||| || |||||||||||||||||||||   ||||| |||||| ||||||||||||| ||||||||||| ||||    
T  47923090 ttgttcgttcgtgggttgattgctagaggtctattatcagattatatgcttattggtttgctaatcaaagaactatgatttt 47923009  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 47924908 - 47924856
Alignment:
Q  92 tatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgcctt 144  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||| || |||||    
T  47924908 tatctaatcaatggctattgcatcatcggtgaatttaaacaagcgattgcctt 47924856  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 1717979 - 1718036
Alignment:
Q  93 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 150  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||| ||||| |||||    
T  1717979 atctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttag 1718036  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 9066378 - 9066435
Alignment:
Q  93 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 150  Q
    ||||||||||||| ||||| ||| ||||||||||||||| |||||| ||||| |||||    
T  9066378 atctaatctatggttattgtatcgtcggtcaatttaaaccagcaattgccttgtttag 9066435  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 9068561 - 9068602
Alignment:
Q  93 atctaatctatggctattgcatcctcggtcaatttaaacaag 134  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  9068561 atctaatctatggctattgcatcgttggtcaatttaaacaag 9068602  T

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