View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2755_high_12 (Length: 435)

Name: NF2755_high_12
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2755_high_12
NF2755_high_12
[»] chr5 (15 HSPs)
chr5 (1-429)||(39486880-39487308)
chr5 (3-430)||(39475923-39476356)
chr5 (3-426)||(39460664-39461090)
chr5 (170-430)||(39463886-39464146)
chr5 (164-410)||(39457644-39457890)
chr5 (85-430)||(39470089-39470433)
chr5 (127-430)||(39483798-39484107)
chr5 (170-430)||(39472614-39472874)
chr5 (168-430)||(39451582-39451844)
chr5 (172-430)||(39455213-39455471)
chr5 (3-59)||(39451417-39451473)
chr5 (325-428)||(43311861-43311964)
chr5 (19-56)||(39455060-39455097)
chr5 (3-72)||(39483674-39483743)
chr5 (1-43)||(39458011-39458053)


Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 39486880 - 39487308
Alignment:
Q  1 tttgaacgagacaacatcgattcaactcagttgctgcagcagaacgaggtagccatcccaagttttgccaactcgattccaattaactcgttgcccattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39486880 tttgaacgagacaacatcgattcaactcagttgctgcagcagaacgaggtagccatcccaagttttgccaactcgattccaattaactcgttgcccagtt 39486979  T
Q  101 tcctgctacacaaggaatatgaatcgtttttcatgaactttgccggtggcatcaaaaaagcaaatgccattatagtaaattcatttgaagagttagaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39486980 tcctgctacacaaggaatatgaatcgtttttcatgaactttgccggtggcatcaaaaaagcaaatgccattatagtaaattcatttgaagagttagaatc 39487079  T
Q  201 acatgctgttcaatcctttttctctcatcctgatctagcagaattaccggtatatccagtgggacccttattaaaccccgagcccaaaactaagggcacc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39487080 acatgctgttcaatcctttttctctcatcctgatctagcagaattaccggtatatccagtgggacccttattaaaccccgagcccaaaactaagggcacc 39487179  T
Q  301 gatgactctgatgatatcatcaagtggcttgatgatcaacctccttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcagg 400  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39487180 gatgagtctgatgatatcatcaagtggcttgatgatcaacctccttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcagg 39487279  T
Q  401 ttaaagagattgcacatgctattgagaat 429  Q
    |||||||||||||||||||||||||||||    
T  39487280 ttaaagagattgcacatgctattgagaat 39487308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 3 - 430
Target Start/End: Original strand, 39475923 - 39476356
Alignment:
Q  3 tgaacgagacaacatcgattcaactcagttgctgcagcagaacgaggtagccatcccaagttttgccaactcgattccaattaactcgttgcccattttc 102  Q
    ||||||||||||  ||||||| |||||| |||||| ||||||||||||||||||||| ||||| |||||| |  ||||    || || ||||||| |||     
T  39475923 tgaacgagacaatgtcgattcgactcagctgctgctgcagaacgaggtagccatcccgagtttcgccaaccccgttccttcaaaatcattgcccagtttt 39476022  T
Q  103 ctgctacacaaggaatatgaatcgtttttcatgaactttgccggtggcatcaaaaaagcaaatgccattatagtaaattcatttgaagagttagaatcac 202  Q
     |||||||||||||||  || |||||||||||||   ||||  | ||| |||| |||| ||||| |||||||||||| |||||||||||| |||||||||    
T  39476023 gtgctacacaaggaatgggagtcgtttttcatgagacttgcaagaggcctcaagaaagtaaatggcattatagtaaactcatttgaagagctagaatcac 39476122  T
Q  203 atgctgttcaatcctttttctctcatcctgatctagcagaattaccggtatatccagtgggacccttattaaaccccgagcccaaaactaagggcac--- 299  Q
    |||| ||||| || ||||||||||||||||||||| | ||  ||| | ||||||| |||||||| ||||||||||  ||||||||||| ||||||||       
T  39476123 atgcggttcactcttttttctctcatcctgatctatcggatatactgatatatccggtgggacctttattaaaccttgagcccaaaacaaagggcactgt 39476222  T
Q  300 ---cgatgactctgatgatatcatcaagtggcttgatgatcaacctccttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggat 396  Q
       || ||| ||||||||| | || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | ||| ||||| |||    
T  39476223 tgacgctgattctgatgatgtaatgaagtggcttgatgatcaacctccttcctccgtagttttcctctgcttcgggagtaggggttattttgatgaagat 39476322  T
Q  397 caggttaaagagattgcacatgctattgagaata 430  Q
    |||||||| ||||| ||||||||| |||||||||    
T  39476323 caggttaaggagatcgcacatgctgttgagaata 39476356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 3 - 426
Target Start/End: Original strand, 39460664 - 39461090
Alignment:
Q  3 tgaacgagacaacatcgattcaactcagttgctgcagcagaacgaggtagccatcccaagttttgccaactcgattccaattaactcgttgcccattttc 102  Q
    |||| |||||||| | ||||||| |||||||| ||||||||  ||  | ||||| |||| ||| ||||||||| |||| ||  ||||| |||||| || |    
T  39460664 tgaaagagacaacgtagattcaaatcagttgcagcagcagactgaattggccataccaactttcgccaactcggttcctatatactcgctgcccagttcc 39460763  T
Q  103 ctgctacacaaggaatatgaatcgtttttcatgaactttgccggtggcatcaaaaaagcaaatgccattatagtaaattcatttgaagagttagaatcac 202  Q
     ||||| |||||||||  ||||| ||||| ||||||| ||| |||||| |||| ||||||||||  |||||||||||||||||||||||| ||||||| |    
T  39460764 atgctaaacaaggaatgggaatccttttttatgaactatgctggtggcctcaagaaagcaaatggtattatagtaaattcatttgaagagctagaatccc 39460863  T
Q  203 atgctgttcaatcctttttctctcatcctgatctagcagaattaccgg---tatatccagtgggacccttattaaaccccgagcccaaaactaagggcac 299  Q
    |||| |||||||| ||||||||||| |||||||||||    |||||||   | ||||| |  |||||| |  ||||||| ||||||||||| ||||| ||    
T  39460864 atgcagttcaatcatttttctctcaccctgatctagctagtttaccggttatttatccggcaggacccattataaaccctgagcccaaaaccaagggaac 39460963  T
Q  300 cgatgactctgatgatatcatcaagtggcttgatgatcaacctccttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcag 399  Q
     | ||  || |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||  |||||  | |||||||||||||||    
T  39460964 agttggttcagatgatatcatcaagtggcttgatgatcaacctctttcctccgtagttttcctctgctttgggactaggggtaccttcgatgaggatcag 39461063  T
Q  400 gttaaagagattgcacatgctattgag 426  Q
     |||| ||||| |||||||| ||||||    
T  39461064 attaaggagatcgcacatgccattgag 39461090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 170 - 430
Target Start/End: Complemental strand, 39464146 - 39463886
Alignment:
Q  170 ttatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctgatctagcagaattaccggtatatccagtgggaccctt 269  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||| || ||||| ||| || ||  |||||| |  |||| | ||||||| ||||||||| |    
T  39464146 ttatagtaaattcatttgaagagctagaatcccatgcagttcattcatttttatctgatactattctagctggtttacggatatatcctgtgggacccat 39464047  T
Q  270 attaaaccccgagcccaaaactaagggcaccgatgactctgatgatatcatcaagtggcttgatgatcaacctccttcctcggtagttttcctctgcttc 369  Q
    ||||||||| ||||||||||| |||| | ||  ||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39464046 attaaacccagagcccaaaaccaaggaccccattgattatgatgatatcatcaagtggcttgatgatcaacctccttcctcagtagttttcctctgcttc 39463947  T
Q  370 gggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattgagaata 430  Q
    |||||||| || ||||||||||| ||||||||||| |||||||||| ||||||||||||||    
T  39463946 gggagcagaggttctttcgatgaagatcaggttaaggagattgcacttgctattgagaata 39463886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 164 - 410
Target Start/End: Complemental strand, 39457890 - 39457644
Alignment:
Q  164 atgccattatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctgatctagcagaattaccggtatatccagtggg 263  Q
    |||||||||| |||||||||||||||||| |||||||  |||| ||||| |||||| |||||||||||||||||||||  |||||  ||||||| || ||    
T  39457890 atgccattattgtaaattcatttgaagagctagaatcctatgccgttcactcctttgtctctcatcctgatctagcaggtttacccatatatccggtagg 39457791  T
Q  264 acccttattaaaccccgagcccaaaactaagggcaccgatgactctgatgatatcatcaagtggcttgatgatcaacctccttcctcggtagttttcctc 363  Q
    |||  ||||||||||| |||||||||| ||| || ||  ||| ||||| |||||  ||||||||||||||||||||||||||||||||| ||||||||||    
T  39457790 accaatattaaaccccaagcccaaaaccaagagcgccattgattctgacgatattgtcaagtggcttgatgatcaacctccttcctcggaagttttcctc 39457691  T
Q  364 tgcttcgggagcaggggctctttcgatgaggatcaggttaaagagat 410  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||    
T  39457690 tgcttcgggagcagggggtttttcgatgaggatcaggttaaggagat 39457644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 85 - 430
Target Start/End: Complemental strand, 39470433 - 39470089
Alignment:
Q  85 aactcgttgcccattttcctgctacacaaggaatatgaatcgtttttcatgaactttgccggtggcatcaaaaaagcaaatgccattatagtaaattcat 184  Q
    ||||||||||||| ||   ||||||||||||||||  ||||  | ||||||| ||| |||   ||| |||| || ||  ||| |||||| || |||||||    
T  39470433 aactcgttgcccagttcagtgctacacaaggaatacaaatccgtcttcatgagcttcgccaaaggcctcaagaatgccgatggcattattgtcaattcat 39470334  T
Q  185 ttgaagagttagaatcacatgctgttcaatcctttttctctcatcctgatctagcagaattaccggtatatccagtgggacccttattaaaccccgagcc 284  Q
    |||||||| |||||||  |||| ||||| ||||||||||||||||| || ||||| |  ||| |  |||||||| | |||||| |||||||||  |||||    
T  39470333 ttgaagagctagaatcctatgcggttcactcctttttctctcatcccgaactagctggtttatccatatatccaataggacccatattaaacctagagcc 39470234  T
Q  285 caaaactaagggcaccgatgactctgatgatatcatcaagtggcttgatgatcaacctccttcctcggtagttttcctctgcttcgggagcaggggctct 384  Q
    |||||| |||||||||| ||| ||||| |||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | |    
T  39470233 caaaaccaagggcaccgttgattctgacgatattgtcaagtggcttgatgatcagcctccttcctcggtagttttcctctgcttcgggagca-gggtttt 39470135  T
Q  385 ttcgatgaggatcaggttaaagagattgcacatgctattgagaata 430  Q
    |||||||||||||||||||| | ||| |||| |||| | |||||||    
T  39470134 ttcgatgaggatcaggttaaggggatcgcacttgctgtagagaata 39470089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 127 - 430
Target Start/End: Original strand, 39483798 - 39484107
Alignment:
Q  127 tttttcatgaactttgccggtggcatcaaaaaagcaaatgccattatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctc 226  Q
    |||||||||| | ||||  | ||| |||| |||| ||||| ||||||||||||||||||| ||||| ||||||| || || ||||| || |||||| |||    
T  39483798 tttttcatgagccttgcaagaggcctcaagaaagtaaatggcattatagtaaattcattttaagagctagaatctcacgcggttcactcttttttcactc 39483897  T
Q  227 atcctgatctagcagaattaccggtatatccagtgggacccttattaaaccccgagcccaaaactaagggcaccgatgac------tctgatgatatcat 320  Q
    |||| |||||| | ||  ||| | ||||||| |||||||| ||||||||||| ||||| ||||| |||||||| | ||||      ||||||||||| ||    
T  39483898 atccagatctatcggatatacagatatatccggtgggacctttattaaaccctgagcctaaaacaaagggcactgttgacgctgattctgatgatataat 39483997  T
Q  321 caagtggcttgatgatcaacctccttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgct 420  Q
     ||||||||| || |||||||||||||||| ||||||||||||||||| ||||| ||||| | ||| ||||| ||||||||||| ||||| ||||||| |    
T  39483998 gaagtggcttcataatcaacctccttcctccgtagttttcctctgctttgggagtaggggttattttgatgaagatcaggttaaggagatcgcacatgtt 39484097  T
Q  421 attgagaata 430  Q
     |||||||||    
T  39484098 gttgagaata 39484107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 170 - 430
Target Start/End: Original strand, 39472614 - 39472874
Alignment:
Q  170 ttatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctgatctagcagaattaccggtatatccagtgggaccctt 269  Q
    ||||||||||||||||||||||| ||||||| || || ||||| ||  |||  ||| |||||| || ||| |  |||||  ||||||| || || ||| |    
T  39472614 ttatagtaaattcatttgaagagctagaatcccacgcagttcactcgatttcatctgatcctggtccagctggtttacctatatatccggtagggcccat 39472713  T
Q  270 attaaaccccgagcccaaaactaagggcaccgatgactctgatgatatcatcaagtggcttgatgatcaacctccttcctcggtagttttcctctgcttc 369  Q
    | | ||||  ||||||||||| |||||||||| ||| || ||||| ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||    
T  39472714 actgaacctggagcccaaaaccaagggcaccgttgattccgatgacatcatcaagtggcttgatgatcaacctgcatcctcagtagttttcctctgcttc 39472813  T
Q  370 gggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattgagaata 430  Q
    || || | ||| |||||||| |||||||||||||   ||||||||   |||||||||||||    
T  39472814 ggaagtatgggttctttcgacgaggatcaggttacgcagattgcatgcgctattgagaata 39472874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 168 - 430
Target Start/End: Original strand, 39451582 - 39451844
Alignment:
Q  168 cattatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctgatctagcagaattaccggt---atatccagtggga 264  Q
    ||||||||||||||||||||||||| |||||||||| || ||||| |||||||||  |||||||||  || ||   |||||  |   |||||| || |||    
T  39451582 cattatagtaaattcatttgaagagctagaatcacacgcggttcactcctttttcaatcatcctgaattaacaagtttaccaattatatatccggtagga 39451681  T
Q  265 cccttattaaaccccgagcccaaaactaagggcaccgatgactctgatgatatcatcaagtggcttgatgatcaacctccttcctcggtagttttcctct 364  Q
    ||  ||||||  || ||||||||||| |||| |   | ||  ||||||   |||||||| ||||||||||||||||||| ||| || || ||||||||||    
T  39451682 cctatattaagtcctgagcccaaaaccaaggacgttgttggttctgat---atcatcaactggcttgatgatcaacctctttcttctgttgttttcctct 39451778  T
Q  365 gcttcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattgagaata 430  Q
    |||| ||||||||||| | |||||||||||| |||||||| ||||| |||||||||||||||||||    
T  39451779 gctttgggagcaggggttgtttcgatgaggaccaggttaaggagatcgcacatgctattgagaata 39451844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 172 - 430
Target Start/End: Original strand, 39455213 - 39455471
Alignment:
Q  172 atagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctgatctagcagaattaccggt---atatccagtgggaccct 268  Q
    ||||||||||||||||||||  | ||||| ||||| ||||| ||||||||||||||||||||  || ||   |||||  |   |||||| || |||||      
T  39455213 atagtaaattcatttgaagatcttgaatctcatgcggttcactcctttttctctcatcctgaattaacaagtttaccaattatatatccggtaggaccta 39455312  T
Q  269 tattaaaccccgagcccaaaactaagggcaccgatgactctgatgatatcatcaagtggcttgatgatcaacctccttcctcggtagttttcctctgctt 368  Q
    ||||||  || ||||||||||| |||| ||  | ||  ||||||   |||||||||||||||||||||||||||| |||||| || |||||||| |||||    
T  39455313 tattaagtcctgagcccaaaaccaaggacattgttggttctgat---atcatcaagtggcttgatgatcaacctctttcctccgtcgttttcctttgctt 39455409  T
Q  369 cgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattgagaata 430  Q
    ||| ||||  || | ||| ||||||||||||||||| ||||| |||  ||||||||||||||    
T  39455410 cggaagcaaaggttgttttgatgaggatcaggttaaggagatcgcatgtgctattgagaata 39455471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 39451417 - 39451473
Alignment:
Q  3 tgaacgagacaacatcgattcaactcagttgctgcagcagaacgaggtagccatccc 59  Q
    ||||||||||||| | |||||||||||||||| ||||||||| ||| ||||||||||    
T  39451417 tgaacgagacaacgttgattcaactcagttgcagcagcagaaagagttagccatccc 39451473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 428
Target Start/End: Complemental strand, 43311964 - 43311861
Alignment:
Q  325 tggcttgatgatcaacctccttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattg 424  Q
    ||||| ||||| ||||||| ||| || |||||||  || ||||| ||||||| ||| |||||||||||||||||  |||  ||||||||  |||||||||    
T  43311964 tggctcgatgaccaacctctttcgtccgtagtttatctttgctttgggagcaagggttctttcgatgaggatcaaattagggagattgcgtatgctattg 43311865  T
Q  425 agaa 428  Q
    ||||    
T  43311864 agaa 43311861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 39455060 - 39455097
Alignment:
Q  19 gattcaactcagttgctgcagcagaacgaggtagccat 56  Q
    |||||||||||||||||||||||||||||| |||||||    
T  39455060 gattcaactcagttgctgcagcagaacgagttagccat 39455097  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 39483674 - 39483743
Alignment:
Q  3 tgaacgagacaacatcgattcaactcagttgctgcagcagaacgaggtagccatcccaagttttgccaac 72  Q
    |||||||||||| |||||||  |||||| |||||||  |||| |||| ||||||||| ||||||||||||    
T  39483674 tgaacgagacaatatcgatttgactcagctgctgcaagagaaagaggcagccatcccgagttttgccaac 39483743  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 39458053 - 39458011
Alignment:
Q  1 tttgaacgagacaacatcgattcaactcagttgctgcagcaga 43  Q
    ||||||||||||||| | ||||| |||||||||||||||||||    
T  39458053 tttgaacgagacaacgttgattccactcagttgctgcagcaga 39458011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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