View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2755_high_13 (Length: 434)

Name: NF2755_high_13
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2755_high_13
NF2755_high_13
[»] chr2 (4 HSPs)
chr2 (43-354)||(43150512-43150822)
chr2 (260-354)||(11460324-11460417)
chr2 (256-354)||(19251913-19252013)
chr2 (256-350)||(34236472-34236566)
[»] chr1 (4 HSPs)
chr1 (256-354)||(926510-926608)
chr1 (259-330)||(5108515-5108586)
chr1 (259-339)||(46526685-46526765)
chr1 (260-354)||(43912261-43912354)
[»] chr6 (1 HSPs)
chr6 (256-346)||(16266793-16266883)
[»] chr8 (3 HSPs)
chr8 (256-354)||(10442115-10442213)
chr8 (256-354)||(16906855-16906953)
chr8 (260-354)||(22570055-22570148)
[»] chr4 (1 HSPs)
chr4 (256-344)||(2366033-2366121)
[»] chr7 (4 HSPs)
chr7 (259-354)||(1382258-1382353)
chr7 (259-354)||(1388363-1388458)
chr7 (256-354)||(23741143-23741241)
chr7 (256-353)||(42951329-42951426)
[»] chr3 (1 HSPs)
chr3 (271-354)||(1106439-1106522)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 43 - 354
Target Start/End: Complemental strand, 43150822 - 43150512
Alignment:
Q  43 taccaagccttcccccttccggtacacgcaaagttagcaacacttaacacgttctctttttgaaggaaactcacgtaaatcttctctccgctttcgatgc 142  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  43150822 taccaagccttcccccttcctgtacacgcaaagttagcaacacttaacacgttctctatttgaaggaaactcacgtaaatcttctctccgctttcgaggc 43150723  T
Q  143 ttattccaaaaatcatgagacccaatctaatatatgga--atgagtggattgtagttattaacccttcgattttttaatatttacaaagatgagataaga 240  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43150722 ttattccaaaaatcatgagacccaatctaatatgtggaatatgagtggattgcagttattaacccttcgattttttaatatttacaaagatgagataaga 43150623  T
Q  241 attggacaaccattgaaccattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaaca 340  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  43150622 attggacaaccattgaaccattcaagac---agaagatcaagaaacatgtcccaagtcatattctataccctataaatctgaaatttgcttaacaaaaca 43150526  T
Q  341 ccccacttgttttt 354  Q
     |||||||||||||    
T  43150525 tcccacttgttttt 43150512  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 354
Target Start/End: Complemental strand, 11460417 - 11460324
Alignment:
Q  260 attcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 354  Q
    |||||||||||||||||||||||||||  ||| |||| || ||| | ||| |||||||||||||||||||| ||||||||| |||||||||||||    
T  11460417 attcaagacagtagaagatcaagaaaccggtcccaagccacattatttgccctataaatctgaaatttgctcaacaaaaca-cccacttgttttt 11460324  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 354
Target Start/End: Original strand, 19251913 - 19252013
Alignment:
Q  256 aaccattcaagacagtagaagatcaagaaacat--gtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgtttt 353  Q
    |||||||||| |||||||||||| || ||| |   ||| ||||||||||||| ||| |||||||||| ||| ||||| ||||||||||||||||| ||||    
T  19251913 aaccattcaaaacagtagaagataaaaaaaaaccagtcgcaagtcatattctttgccctataaatctaaaacttgctcaacaaaacaccccacttatttt 19252012  T
Q  354 t 354  Q
    |    
T  19252013 t 19252013  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 350
Target Start/End: Complemental strand, 34236566 - 34236472
Alignment:
Q  256 aaccattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgt 350  Q
    |||||||||||||| ||||||||||||||||  ||| |||| |||||| | |||  ||||||| |||||  | || |||  ||||||||||||||    
T  34236566 aaccattcaagacattagaagatcaagaaaccagtcccaagccatattgtttgccttataaatttgaaacgtcctcaacggaacaccccacttgt 34236472  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 256 - 354
Target Start/End: Original strand, 926510 - 926608
Alignment:
Q  256 aaccattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 354  Q
    ||||| |||||| | ||||||||||||||||  ||| |||| |||||||| |||||||||||||||||| ||| | |||||||||||||||||||||||    
T  926510 aaccactcaagatattagaagatcaagaaaccagtcccaagccatattctttgctctataaatctgaaacttgttcaacaaaacaccccacttgttttt 926608  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 5108515 - 5108586
Alignment:
Q  259 cattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgct 330  Q
    |||| |||||| ||||||||||||||||| ||| | ||||||||||||||| |||||||||||||| |||||    
T  5108515 catttaagacactagaagatcaagaaacaagtcacgagtcatattctatgccctataaatctgaaacttgct 5108586  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 339
Target Start/End: Complemental strand, 46526765 - 46526685
Alignment:
Q  259 cattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaac 339  Q
    ||||||||||| ||||||| ||||||||| |||||||| |||||||| ||  |||||||||||||| ||| | ||||||||    
T  46526765 cattcaagacaatagaagaacaagaaacaagtctcaagccatattctttgtcctataaatctgaaacttgttcaacaaaac 46526685  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 354
Target Start/End: Original strand, 43912261 - 43912354
Alignment:
Q  260 attcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 354  Q
    ||||| |||| ||||||||||||| ||  |||  ||| || ||| | ||| |||||||||||||| ||||| ||||||||| |||||||||||||    
T  43912261 attcaggacaatagaagatcaagacaccggtcgtaagccacattgtttgccctataaatctgaaacttgctcaacaaaaca-cccacttgttttt 43912354  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 256 - 346
Target Start/End: Original strand, 16266793 - 16266883
Alignment:
Q  256 aaccattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccac 346  Q
    ||||||||||||||  |||||||||||||||  ||| |||| |||||||| ||| |||||||||||||| ||||| |||||||||||||||    
T  16266793 aaccattcaagacaaaagaagatcaagaaaccagtcccaagccatattctttgccctataaatctgaaacttgctcaacaaaacaccccac 16266883  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 354
Target Start/End: Complemental strand, 10442213 - 10442115
Alignment:
Q  256 aaccattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 354  Q
    ||||||||||||| |||||||||||||||||  ||  |||  |||||||| |||  ||||||||| ||| ||||| |||||||||||||||||||||||    
T  10442213 aaccattcaagacggtagaagatcaagaaaccagttccaacacatattctttgcgttataaatctaaaacttgctcaacaaaacaccccacttgttttt 10442115  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 354
Target Start/End: Complemental strand, 16906953 - 16906855
Alignment:
Q  256 aaccattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 354  Q
    |||||||||||||| |||||||| ||| |||  ||| |||| |||||||| ||| |||||||||||||| || || || |||||||||||||| |||||    
T  16906953 aaccattcaagacaatagaagatgaagcaactagtcccaagccatattctttgccctataaatctgaaacttactcaataaaacaccccacttattttt 16906855  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 354
Target Start/End: Complemental strand, 22570148 - 22570055
Alignment:
Q  260 attcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 354  Q
    |||| ||||||||||||||||||||||   ||||||| |||||| | ||| |||||||||||||  ||||| ||||||||||| |||||||||||    
T  22570148 attcgagacagtagaagatcaagaaaccaatctcaaggcatatttt-tgccctataaatctgaaccttgctcaacaaaacacctcacttgttttt 22570055  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 2366033 - 2366121
Alignment:
Q  256 aaccattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacacccc 344  Q
    |||||||||||||||||||||||||||||||  |||  ||| |||||||| ||| |||||||| |||||||| ||  ||||||||||||    
T  2366033 aaccattcaagacagtagaagatcaagaaaccagtcctaagccatattctttgccctataaatttgaaattttctcgacaaaacacccc 2366121  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 354
Target Start/End: Complemental strand, 1382353 - 1382258
Alignment:
Q  259 cattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 354  Q
    |||||||||| ||||||  |||| ||||| |||||||||| |||||| ||| |||||||| ||||| ||||| |||||||   |||||||||||||    
T  1382353 cattcaagacggtagaaagtcaaaaaacaagtctcaagtcgtattctttgccctataaatttgaaacttgctaaacaaaaacacccacttgttttt 1382258  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 354
Target Start/End: Complemental strand, 1388458 - 1388363
Alignment:
Q  259 cattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 354  Q
    |||||||||| ||||||  |||| ||||| |||||||||| |||||| ||| |||||||| ||||| ||||| |||||||   |||||||||||||    
T  1388458 cattcaagacggtagaaagtcaaaaaacaagtctcaagtcgtattctttgccctataaatttgaaacttgctaaacaaaaacacccacttgttttt 1388363  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 354
Target Start/End: Original strand, 23741143 - 23741241
Alignment:
Q  256 aaccattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 354  Q
    ||||||||||||  ||||||| |||||||||  || ||||| |||| ||| |||  ||||||||| ||| || || |||||||||||||||||||||||    
T  23741143 aaccattcaagaacgtagaagttcaagaaaccagtttcaagacataatctttgcattataaatctaaaacttactcaacaaaacaccccacttgttttt 23741241  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 353
Target Start/End: Complemental strand, 42951426 - 42951329
Alignment:
Q  256 aaccattcaagacagtagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgtttt 353  Q
    ||||||||||||||||| ||||||||||||   ||| |||| |||||| | | | |||| ||||||||| ||||| ||||||||  ||||||||||||    
T  42951426 aaccattcaagacagtaaaagatcaagaaatcagtcgcaagccatattatttaccctatgaatctgaaacttgctcaacaaaactgcccacttgtttt 42951329  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 354
Target Start/End: Complemental strand, 1106522 - 1106439
Alignment:
Q  271 tagaagatcaagaaacatgtctcaagtcatattctatgctctataaatctgaaatttgcttaacaaaacaccccacttgttttt 354  Q
    ||||||||||||||||   ||||||| | |||||| ||| |||||||||||||| ||||| ||||||||||| |||||| ||||    
T  1106522 tagaagatcaagaaaccaatctcaagccgtattctttgccctataaatctgaaacttgctcaacaaaacacctcacttgctttt 1106439  T

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