View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2755_high_26 (Length: 322)

Name: NF2755_high_26
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2755_high_26
NF2755_high_26
[»] chr2 (7 HSPs)
chr2 (248-322)||(7154987-7155061)
chr2 (248-303)||(17316395-17316450)
chr2 (261-305)||(35819003-35819047)
chr2 (107-141)||(12732910-12732944)
chr2 (107-142)||(7154843-7154878)
chr2 (258-303)||(12733114-12733159)
chr2 (251-312)||(45710101-45710162)
[»] chr7 (14 HSPs)
chr7 (251-313)||(48825890-48825952)
chr7 (248-305)||(37179966-37180023)
chr7 (250-304)||(24237463-24237517)
chr7 (251-311)||(19423656-19423716)
chr7 (107-141)||(22023634-22023668)
chr7 (107-141)||(24375422-24375456)
chr7 (261-304)||(22696782-22696825)
chr7 (107-141)||(2898320-2898354)
chr7 (251-321)||(13726103-13726173)
chr7 (107-141)||(48826068-48826102)
chr7 (251-288)||(21529585-21529622)
chr7 (265-294)||(21534161-21534190)
chr7 (252-300)||(29453051-29453099)
chr7 (252-304)||(46661280-46661332)
[»] chr6 (3 HSPs)
chr6 (251-322)||(2252443-2252514)
chr6 (251-304)||(15584982-15585035)
chr6 (107-141)||(2252288-2252322)
[»] chr4 (11 HSPs)
chr4 (248-301)||(54856752-54856805)
chr4 (251-304)||(12049553-12049606)
chr4 (248-304)||(49600089-49600145)
chr4 (248-303)||(3124935-3124990)
chr4 (109-141)||(11388996-11389028)
chr4 (251-303)||(36557044-36557096)
chr4 (110-141)||(12049723-12049754)
chr4 (107-142)||(54856916-54856951)
chr4 (112-141)||(8367905-8367934)
chr4 (107-136)||(34559539-34559568)
chr4 (272-304)||(11389180-11389212)
[»] chr3 (5 HSPs)
chr3 (251-308)||(3987275-3987332)
chr3 (250-305)||(41653896-41653950)
chr3 (253-305)||(41653751-41653802)
chr3 (251-308)||(30485170-30485227)
chr3 (107-141)||(41654064-41654098)
[»] chr1 (8 HSPs)
chr1 (248-313)||(8342181-8342247)
chr1 (248-313)||(25892660-25892725)
chr1 (251-306)||(37491248-37491303)
chr1 (272-322)||(25711144-25711194)
chr1 (107-141)||(32226305-32226339)
chr1 (261-313)||(31460608-31460660)
chr1 (251-290)||(32226456-32226495)
chr1 (261-304)||(36496813-36496856)
[»] chr5 (4 HSPs)
chr5 (248-288)||(1374458-1374498)
chr5 (260-306)||(2327798-2327844)
chr5 (107-137)||(37325676-37325706)
chr5 (260-305)||(30874953-30874998)
[»] chr8 (5 HSPs)
chr8 (248-290)||(14358496-14358538)
chr8 (107-141)||(22576217-22576251)
chr8 (248-293)||(22576364-22576409)
chr8 (274-303)||(25029343-25029372)
chr8 (270-315)||(28852587-28852632)
[»] scaffold0172 (1 HSPs)
scaffold0172 (251-303)||(31053-31105)
[»] scaffold0072 (1 HSPs)
scaffold0072 (107-137)||(6239-6269)


Alignment Details
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 248 - 322
Target Start/End: Original strand, 7154987 - 7155061
Alignment:
Q  248 agtgtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctatctgctccgctccactatgc 322  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7154987 agtgtcaatatgaaaattttcaactaaaatcaaatagcggccgaagcggccgctatctgctccgctccactatgc 7155061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 17316395 - 17316450
Alignment:
Q  248 agtgtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctat 303  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  17316395 agtgtcaatttgaaaattttcaactaaaatcaaatagcggctgaagcgaccgctat 17316450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 35819047 - 35819003
Alignment:
Q  261 aaattttcaactaaaatcaaatagcggctgaagcggccgctatct 305  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  35819047 aaatttccaactaaaatcaaatagcggctgaagcggccgctatct 35819003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 12732910 - 12732944
Alignment:
Q  107 acaagagaaaccataaaacaaaagaaaacagagga 141  Q
    |||||||||||||||||||||||||||||||||||    
T  12732910 acaagagaaaccataaaacaaaagaaaacagagga 12732944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 142
Target Start/End: Original strand, 7154843 - 7154878
Alignment:
Q  107 acaagagaaaccataaaacaaaagaaaacagaggac 142  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7154843 acaagagaaaccataaaacaaaataaaacagaggac 7154878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 12733114 - 12733159
Alignment:
Q  258 tgaaaattttcaactaaaatcaaatagcggctgaagcggccgctat 303  Q
    ||||||||| | ||||||||||||||| |||||||||||| |||||    
T  12733114 tgaaaatttcctactaaaatcaaatagtggctgaagcggctgctat 12733159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 45710101 - 45710162
Alignment:
Q  251 gtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctatctgctccgc 312  Q
    |||||| ||||||||| | || ||||||||||| ||||||||||| | |||||| |||||||    
T  45710101 gtcaatttgaaaatttcctaccaaaatcaaataacggctgaagcgcctgctatccgctccgc 45710162  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 48825952 - 48825890
Alignment:
Q  251 gtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctatctgctccgct 313  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  48825952 gtcaatttgaaaattttcaactaaaatcaaatagcggctgaagcggctgctatccgctccgct 48825890  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 37180023 - 37179966
Alignment:
Q  248 agtgtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctatct 305  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  37180023 agtgtcaatttgaaaattttcaactaaaatcaaatagcagctgaagcggccgctatct 37179966  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 24237463 - 24237517
Alignment:
Q  250 tgtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctatc 304  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  24237463 tgtcaatttgaaaattttcaactaaaatcaaataggggctgaagcggccgttatc 24237517  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 19423716 - 19423656
Alignment:
Q  251 gtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctatctgctccg 311  Q
    |||||||||||||||| | ||||||||||||||||||||||||| |||  |||||||||||    
T  19423716 gtcaatatgaaaatttcctactaaaatcaaatagcggctgaagctgccattatctgctccg 19423656  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 22023668 - 22023634
Alignment:
Q  107 acaagagaaaccataaaacaaaagaaaacagagga 141  Q
    |||||||||||||||||||||||||||||||||||    
T  22023668 acaagagaaaccataaaacaaaagaaaacagagga 22023634  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 24375456 - 24375422
Alignment:
Q  107 acaagagaaaccataaaacaaaagaaaacagagga 141  Q
    |||||||||||||||||||||||||||||||||||    
T  24375456 acaagagaaaccataaaacaaaagaaaacagagga 24375422  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 304
Target Start/End: Original strand, 22696782 - 22696825
Alignment:
Q  261 aaattttcaactaaaatcaaatagcggctgaagcggccgctatc 304  Q
    |||||| | |||||||||||||||||||||| ||||||||||||    
T  22696782 aaatttcctactaaaatcaaatagcggctgacgcggccgctatc 22696825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 2898354 - 2898320
Alignment:
Q  107 acaagagaaaccataaaacaaaagaaaacagagga 141  Q
    |||||||||||||||||||||||||||||| ||||    
T  2898354 acaagagaaaccataaaacaaaagaaaacaaagga 2898320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 13726173 - 13726103
Alignment:
Q  251 gtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctatctgctccgctccactatg 321  Q
    |||||| ||||||||| | ||||||||||||||||  |||||||||| |||| | ||||||| || |||||    
T  13726173 gtcaatttgaaaatttcctactaaaatcaaatagcatctgaagcggctgctaaccgctccgcaccgctatg 13726103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 48826102 - 48826068
Alignment:
Q  107 acaagagaaaccataaaacaaaagaaaacagagga 141  Q
    |||||||||||||||||||||||||||||| ||||    
T  48826102 acaagagaaaccataaaacaaaagaaaacatagga 48826068  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 21529622 - 21529585
Alignment:
Q  251 gtcaatatgaaaattttcaactaaaatcaaatagcggc 288  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  21529622 gtcaatttgaaaaatttcaactaaaatcaaatagcggc 21529585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 294
Target Start/End: Complemental strand, 21534190 - 21534161
Alignment:
Q  265 tttcaactaaaatcaaatagcggctgaagc 294  Q
    ||||||||||||||||||||||||||||||    
T  21534190 tttcaactaaaatcaaatagcggctgaagc 21534161  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 29453051 - 29453099
Alignment:
Q  252 tcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgc 300  Q
    ||||| ||||||||| | | |||||||||||||||| ||||||||||||    
T  29453051 tcaatttgaaaatttcctattaaaatcaaatagcggttgaagcggccgc 29453099  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 46661280 - 46661332
Alignment:
Q  252 tcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctatc 304  Q
    ||||| ||||||||||| | |||||||||||| ||||||||| |||| |||||    
T  46661280 tcaatttgaaaattttctattaaaatcaaataacggctgaagtggccactatc 46661332  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 251 - 322
Target Start/End: Original strand, 2252443 - 2252514
Alignment:
Q  251 gtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctatctgctccgctccactatgc 322  Q
    |||||| || ||||||||||||||||||||| ||| |||||||||||||||||| |||| ||||||||||||    
T  2252443 gtcaatttggaaattttcaactaaaatcaaacagcagctgaagcggccgctatccgctctgctccactatgc 2252514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 15584982 - 15585035
Alignment:
Q  251 gtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctatc 304  Q
    |||||| ||||||||| | ||||||||||||| |||||||||||||||||||||    
T  15584982 gtcaatttgaaaatttcctactaaaatcaaatggcggctgaagcggccgctatc 15585035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 2252288 - 2252322
Alignment:
Q  107 acaagagaaaccataaaacaaaagaaaacagagga 141  Q
    |||||||||||||||||||||||||||||||||||    
T  2252288 acaagagaaaccataaaacaaaagaaaacagagga 2252322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 54856805 - 54856752
Alignment:
Q  248 agtgtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgct 301  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  54856805 agtgtcaatttgaaaattttcaactaaaatcaaatagcggttgaagcggccgct 54856752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 12049606 - 12049553
Alignment:
Q  251 gtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctatc 304  Q
    |||||| || |||||||||||||||||||||||||| |||||||||||||||||    
T  12049606 gtcaatttggaaattttcaactaaaatcaaatagcgtctgaagcggccgctatc 12049553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 49600145 - 49600089
Alignment:
Q  248 agtgtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctatc 304  Q
    ||||||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||    
T  49600145 agtgtcaatttgaaaattttcgactaaaatcaaatagcggttgaagcgtccgctatc 49600089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 3124990 - 3124935
Alignment:
Q  248 agtgtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctat 303  Q
    ||||||||| ||||||||| |  |||||||||||||| ||||||||||||||||||    
T  3124990 agtgtcaatttgaaaatttcctgctaaaatcaaatagtggctgaagcggccgctat 3124935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 11388996 - 11389028
Alignment:
Q  109 aagagaaaccataaaacaaaagaaaacagagga 141  Q
    |||||||||||||||||||||||||||||||||    
T  11388996 aagagaaaccataaaacaaaagaaaacagagga 11389028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 36557044 - 36557096
Alignment:
Q  251 gtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctat 303  Q
    |||||| || |||||||||| |||||||||||||| |||||||||||| ||||    
T  36557044 gtcaatttggaaattttcaattaaaatcaaatagcagctgaagcggccactat 36557096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 141
Target Start/End: Complemental strand, 12049754 - 12049723
Alignment:
Q  110 agagaaaccataaaacaaaagaaaacagagga 141  Q
    ||||||||||||||||||||||||||||||||    
T  12049754 agagaaaccataaaacaaaagaaaacagagga 12049723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 142
Target Start/End: Complemental strand, 54856951 - 54856916
Alignment:
Q  107 acaagagaaaccataaaacaaaagaaaacagaggac 142  Q
    |||||||||||||||||||||||||||| |||||||    
T  54856951 acaagagaaaccataaaacaaaagaaaatagaggac 54856916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 8367934 - 8367905
Alignment:
Q  112 agaaaccataaaacaaaagaaaacagagga 141  Q
    ||||||||||||||||||||||||||||||    
T  8367934 agaaaccataaaacaaaagaaaacagagga 8367905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 34559539 - 34559568
Alignment:
Q  107 acaagagaaaccataaaacaaaagaaaaca 136  Q
    ||||||||||||||||||||||||||||||    
T  34559539 acaagagaaaccataaaacaaaagaaaaca 34559568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 11389180 - 11389212
Alignment:
Q  272 taaaatcaaatagcggctgaagcggccgctatc 304  Q
    |||||||||||||||| ||||||||||||||||    
T  11389180 taaaatcaaatagcggttgaagcggccgctatc 11389212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 3987332 - 3987275
Alignment:
Q  251 gtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctatctgct 308  Q
    |||||| || |||||||||||||||||||||||||||||||||||||| |||||||||    
T  3987332 gtcaatttggaaattttcaactaaaatcaaatagcggctgaagcggccactatctgct 3987275  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 41653950 - 41653896
Alignment:
Q  250 tgtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctatct 305  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  41653950 tgtcaatttgaaaattttcaactaaaatcaaata-cggctgaagcggccgctatct 41653896  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 41653802 - 41653751
Alignment:
Q  253 caatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctatct 305  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41653802 caatttgaaaattttcaactaaaatcaaatag-ggctgaagcggccgctatct 41653751  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 30485170 - 30485227
Alignment:
Q  251 gtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctatctgct 308  Q
    |||||| || |||||| | |||||||||||||||||| |||||||||| |||||||||    
T  30485170 gtcaatttggaaatttcctactaaaatcaaatagcgggtgaagcggccactatctgct 30485227  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 41654098 - 41654064
Alignment:
Q  107 acaagagaaaccataaaacaaaagaaaacagagga 141  Q
    |||||||||||||||||||| ||||||||||||||    
T  41654098 acaagagaaaccataaaacagaagaaaacagagga 41654064  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 8342181 - 8342247
Alignment:
Q  248 agtgtcaatatgaaaat-tttcaactaaaatcaaatagcggctgaagcggccgctatctgctccgct 313  Q
    ||||||||| ||||||  ||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  8342181 agtgtcaatttgaaaaaatttcaactaaaatcaaatagcggctgaagtggccgctatccgctccgct 8342247  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 25892725 - 25892660
Alignment:
Q  248 agtgtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctatctgctccgct 313  Q
    ||||||||  |||| |||||||||||||||||| ||| || |||||||||||||||| ||||||||    
T  25892725 agtgtcaaattgaatattttcaactaaaatcaattagaggttgaagcggccgctatccgctccgct 25892660  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 37491248 - 37491303
Alignment:
Q  251 gtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctatctg 306  Q
    |||||| ||||||| |||||||||||||||||| |||||||||| | |||||||||    
T  37491248 gtcaatttgaaaatattcaactaaaatcaaataacggctgaagcagtcgctatctg 37491303  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 25711144 - 25711194
Alignment:
Q  272 taaaatcaaatagcggctgaagcggccgctatctgctccgctccactatgc 322  Q
    ||||||||||| | ||||||||||||||||||| ||||||| |||||||||    
T  25711144 taaaatcaaattgtggctgaagcggccgctatccgctccgcaccactatgc 25711194  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 32226305 - 32226339
Alignment:
Q  107 acaagagaaaccataaaacaaaagaaaacagagga 141  Q
    |||||||||||||||||||||||||||||||||||    
T  32226305 acaagagaaaccataaaacaaaagaaaacagagga 32226339  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 31460660 - 31460608
Alignment:
Q  261 aaattttcaactaaaatcaaatagcggctgaagcggccgctatctgctccgct 313  Q
    ||||||||||||||||||||||||||| ||||| || || |||| ||||||||    
T  31460660 aaattttcaactaaaatcaaatagcggttgaagtggtcgttatccgctccgct 31460608  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 32226456 - 32226495
Alignment:
Q  251 gtcaatatgaaaattttcaactaaaatcaaatagcggctg 290  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  32226456 gtcaatttggaaattttcaactaaaatcaaatagcggctg 32226495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 304
Target Start/End: Complemental strand, 36496856 - 36496813
Alignment:
Q  261 aaattttcaactaaaatcaaatagcggctgaagcggccgctatc 304  Q
    |||||| | |||||||||||||| ||||||||||||||||||||    
T  36496856 aaatttcctactaaaatcaaataccggctgaagcggccgctatc 36496813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 1374498 - 1374458
Alignment:
Q  248 agtgtcaatatgaaaattttcaactaaaatcaaatagcggc 288  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  1374498 agtgtcaatttgaaaattttcaactaaaatcaaatagcggc 1374458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 2327798 - 2327844
Alignment:
Q  260 aaaattttcaactaaaatcaaatagcggctgaagcggccgctatctg 306  Q
    |||| ||||||||||||||||||||| ||||||||| | ||||||||    
T  2327798 aaaaatttcaactaaaatcaaatagctgctgaagcgacagctatctg 2327844  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 137
Target Start/End: Complemental strand, 37325706 - 37325676
Alignment:
Q  107 acaagagaaaccataaaacaaaagaaaacag 137  Q
    |||||||||||||||||||||||||||||||    
T  37325706 acaagagaaaccataaaacaaaagaaaacag 37325676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 30874953 - 30874998
Alignment:
Q  260 aaaattttcaactaaaatcaaatagcggctgaagcggccgctatct 305  Q
    ||||||| | |||||||||||||||| |||||||||||| ||||||    
T  30874953 aaaatttcctactaaaatcaaatagcagctgaagcggcctctatct 30874998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 290
Target Start/End: Complemental strand, 14358538 - 14358496
Alignment:
Q  248 agtgtcaatatgaaaattttcaactaaaatcaaatagcggctg 290  Q
    ||||| ||| |||||||||||||||||||||||||||||||||    
T  14358538 agtgtaaatttgaaaattttcaactaaaatcaaatagcggctg 14358496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 22576217 - 22576251
Alignment:
Q  107 acaagagaaaccataaaacaaaagaaaacagagga 141  Q
    |||||||||| ||||||||||||||||||||||||    
T  22576217 acaagagaaagcataaaacaaaagaaaacagagga 22576251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 22576364 - 22576409
Alignment:
Q  248 agtgtcaatatgaaaattttcaactaaaatcaaatagcggctgaag 293  Q
    |||| |||| ||||||||||||||||||||||||||| || |||||    
T  22576364 agtgacaatttgaaaattttcaactaaaatcaaatagaggatgaag 22576409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 303
Target Start/End: Complemental strand, 25029372 - 25029343
Alignment:
Q  274 aaatcaaatagcggctgaagcggccgctat 303  Q
    ||||||||||||||||||||||||||||||    
T  25029372 aaatcaaatagcggctgaagcggccgctat 25029343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 28852632 - 28852587
Alignment:
Q  270 actaaaatcaaatagcggctgaagcggccgctatctgctccgctcc 315  Q
    |||||||||||||||||||| |||| |||| |||| ||||||||||    
T  28852632 actaaaatcaaatagcggctaaagcagccgttatccgctccgctcc 28852587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 31053 - 31105
Alignment:
Q  251 gtcaatatgaaaattttcaactaaaatcaaatagcggctgaagcggccgctat 303  Q
    |||||| ||||||||| | |||||||||||||| ||||||||| |||||||||    
T  31053 gtcaatttgaaaatttcctactaaaatcaaataacggctgaagtggccgctat 31105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 137
Target Start/End: Original strand, 6239 - 6269
Alignment:
Q  107 acaagagaaaccataaaacaaaagaaaacag 137  Q
    |||||||||||||||||||||||||||||||    
T  6239 acaagagaaaccataaaacaaaagaaaacag 6269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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