View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2755_high_27 (Length: 315)
Name: NF2755_high_27
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2755_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 34416055 - 34415769
Alignment:
| Q |
16 |
catccatcataatctgttgagttttaggatcatggcagtactccaagactctctgcttatcaaaacttaactaatttagaatcatagtctctggccagtt |
115 |
Q |
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| T |
34416055 |
catccatcataatctgttgagttttaggatcatggcagtactccaagactctctgcttatcaaaactcaactaatttagaatcatagtctctggccagtt |
34415956 |
T |
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| Q |
116 |
attttcaattcagtaaatgtgttcacacaaataaaatcaaaaggatgaatttgtcacctgtataacacggcaaccatatggatgagttgacaacgtcaca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34415955 |
attttcaattcagtaaatgtgttcacacaaataaaatcaaaaggatgaatttgtcacctgtataacacggcaaccatatggatgagttgacaacgtcaca |
34415856 |
T |
|
| Q |
216 |
acttggtcataaaacgttgaaacgataaacttgatttcatcctcaggtacacattcaatacacttctggatgacatggtttccattc |
302 |
Q |
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| T |
34415855 |
acttggtcataaaacgttgaaacgataaacttgatttcatcctcaggtacacattcaatacacttctggatgacatggtttccattc |
34415769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 55 - 302
Target Start/End: Original strand, 155459 - 155706
Alignment:
| Q |
55 |
actccaagactctctgcttatcaaaacttaactaatttagaatcatagtctctggccagttattttcaattcagtaaatgtgttcacacaaataaaatca |
154 |
Q |
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| T |
155459 |
actccaagactctctgcttatcaaaacttaactagtttagaatcatagtttcttgccagttattatcaattcagtaaatgtgttcacacaaataaaataa |
155558 |
T |
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| Q |
155 |
aaaggatgaatttgtcacctgtataacacggcaaccatatggatgagttgacaacgtcacaacttggtcataaaacgttgaaacgataaacttgatttca |
254 |
Q |
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| T |
155559 |
aaaggatggatatgtcacctgtataacacgacagctatatggatgagctgacaacgtcacaacttggttataaaacgttgaaacgataaacctgatttca |
155658 |
T |
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| Q |
255 |
tcctcaggtacacattcaatacacttctggatgacatggtttccattc |
302 |
Q |
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| T |
155659 |
tcctcaggtacacattcaatacacttctggatgacatggtttccattc |
155706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 302
Target Start/End: Complemental strand, 24139072 - 24138941
Alignment:
| Q |
171 |
acctgtataacacggcaaccatatggatgagttgacaacgtcacaacttggtcataaaacgttgaaacgataaacttgatttcatcctcaggtacacatt |
270 |
Q |
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|||||||| ||||| ||||| |||||||| ||||| | ||||||||||| || |||| |||||||| ||||| | ||| | || ||||| ||||||| |
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| T |
24139072 |
acctgtatcacacgacaaccgtatggatgggttgagagtgtcacaacttgatcgaaaaatgttgaaacaataaagtcgatcgcctcttcagggacacatt |
24138973 |
T |
|
| Q |
271 |
caatacacttctggatgacatggtttccattc |
302 |
Q |
| |
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| T |
24138972 |
caatacatttctgaatgacatgattaccattc |
24138941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 302
Target Start/End: Complemental strand, 41721399 - 41721268
Alignment:
| Q |
171 |
acctgtataacacggcaaccatatggatgagttgacaacgtcacaacttggtcataaaacgttgaaacgataaacttgatttcatcctcaggtacacatt |
270 |
Q |
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|||||||| || ||||||||||||||||| || || | ||||||||||| ||| |||| ||||| | ||||| | ||| |||| |||||||| |||| |
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| T |
41721399 |
acctgtatcacccggcaaccatatggatgggtagatagtgtcacaacttgatcaaaaaaagttgagataataaaatcaattgcatcttcaggtacgcatt |
41721300 |
T |
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| Q |
271 |
caatacacttctggatgacatggtttccattc |
302 |
Q |
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||||||||||||| ||||||||||| |||||| |
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| T |
41721299 |
caatacacttctgaatgacatggttaccattc |
41721268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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