View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2755_high_28 (Length: 311)
Name: NF2755_high_28
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2755_high_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 27426587 - 27426299
Alignment:
| Q |
1 |
ccatgtggaggttcgtgagccattgtctcatactaaaccctgtcatataaaatagcctactaagtactaaccattcaactctttaaataaggatatccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27426587 |
ccatgtggaggttcgtgagccattgtctcatactaaaccctgtcatataatatagcctactaagtactaaccattcaactctttaaataaggatatccta |
27426488 |
T |
|
| Q |
101 |
acagggaccatggaatgaggcctctgtcattcagtgaaataattgaccttgttactgaattgttattgtgcacttgttgtttatgaagggaagttacctc |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27426487 |
acagggaccatggaatgaggcctgtgtcattcagtgaaataattgaccttgttactgaattgttattgtgcacttgttctttatgaagggaagttacctc |
27426388 |
T |
|
| Q |
201 |
atgtctatgttatgtagttattaaaaagaaaagtttgtaaatttatgtatcacctttgtcctatgaaaattaattttgctatacccttg |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27426387 |
atgtctatgttatgtagttattaaaaagaaaactttgtaaatttatgtttcacctttgtcctatgaaaattaattttgctatacccttg |
27426299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 27416377 - 27416260
Alignment:
| Q |
61 |
taagtactaaccattcaactctttaaataaggatatcctaacagggaccatggaatgaggcctctgtcattcagtgaaataattgaccttgttactgaat |
160 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||| ||||||| ||||| |
|
|
| T |
27416377 |
taagtactaaccattcaattctttagataaggatatcctaacaggaaccatataatgaggcctatgtcattcagtgaaataatttcccttgttgatgaat |
27416278 |
T |
|
| Q |
161 |
tgttattgtgcacttgtt |
178 |
Q |
| |
|
|| ||||||| ||||||| |
|
|
| T |
27416277 |
tggtattgtgtacttgtt |
27416260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 27420906 - 27420803
Alignment:
| Q |
72 |
cattcaactctttaaataaggatatcctaacagggaccatggaatgaggcctctgtcattcagtgaaataattgaccttgttactgaattgttattgtgc |
171 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| ||||| ||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||| | |
|
|
| T |
27420906 |
cattcaattctttagataaggatatcctaacaggcaccatagaatgcagcctatgtcattcagtgaaacaattgactttgttactgaattgttattgtac |
27420807 |
T |
|
| Q |
172 |
actt |
175 |
Q |
| |
|
|||| |
|
|
| T |
27420806 |
actt |
27420803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 61 - 176
Target Start/End: Original strand, 27569459 - 27569575
Alignment:
| Q |
61 |
taagtactaaccattcaactctttaaataaggatatcctaacagggaccatggaatgaggcctctgtcattcagtgaaataattgaccttgttact-gaa |
159 |
Q |
| |
|
|||||| ||||||||||| |||||| ||||||||||||||||||| ||||| |||||||| | ||||||| |||| |||||||||| |||||||| | | |
|
|
| T |
27569459 |
taagtagtaaccattcaattctttagataaggatatcctaacaggaaccatagaatgaggaatgtgtcattaagtggaataattgactttgttactggca |
27569558 |
T |
|
| Q |
160 |
ttgttattgtgcacttg |
176 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
27569559 |
ttgtaattgtgcacttg |
27569575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 27413423 - 27413358
Alignment:
| Q |
57 |
ctactaagtactaaccattcaactctttaaataaggatatcctaacagggaccatggaatgaggcc |
122 |
Q |
| |
|
||||| |||| ||||||||||| |||| | ||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
27413423 |
ctactcagtaataaccattcaattcttaagataaggatatcctaacaggaaccatagaatgaggcc |
27413358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 167
Target Start/End: Original strand, 27565598 - 27565640
Alignment:
| Q |
125 |
tgtcattcagtgaaataattgaccttgttactgaattgttatt |
167 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
27565598 |
tgtcattcagtaaaatagtttaccttgttactgaattgttatt |
27565640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University