View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2755_high_29 (Length: 306)

Name: NF2755_high_29
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2755_high_29
NF2755_high_29
[»] chr2 (1 HSPs)
chr2 (31-139)||(13049252-13049370)
[»] chr8 (1 HSPs)
chr8 (152-220)||(33469363-33469435)


Alignment Details
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 13049252 - 13049370
Alignment:
Q  31 atgtgatggaaattaattgctacagtacttggtaaattttactaccttaggtaccctcttatatatatg----------tactgtcatgtattgtggcta 120  Q
    |||||||||||||||||||||  || |||||| ||||||||||||||||||||||||||||||| ||||          |||||||||||||||||||||    
T  13049252 atgtgatggaaattaattgctgaagcacttggaaaattttactaccttaggtaccctcttatatttatgtactgaaagttactgtcatgtattgtggcta 13049351  T
Q  121 acatttttacaattattac 139  Q
    |||||||||| ||||||||    
T  13049352 acatttttacgattattac 13049370  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 33469363 - 33469435
Alignment:
Q  152 tacagtatttgtcttatttaagtgatgtgacattttttctacaccat----cccaagttaggaagaataagga 220  Q
    |||||||||||| |||||||||||||||||||||||||||| || ||    ||||||||||||||||||||||    
T  33469363 tacagtatttgttttatttaagtgatgtgacattttttctatactatcccacccaagttaggaagaataagga 33469435  T

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