View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2755_high_4 (Length: 647)

Name: NF2755_high_4
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2755_high_4
NF2755_high_4
[»] chr1 (1 HSPs)
chr1 (8-632)||(32033605-32034232)


Alignment Details
Target: chr1 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 8 - 632
Target Start/End: Complemental strand, 32034232 - 32033605
Alignment:
Q  8 gagcagagaaccatttgggcaacaatgttcactcttaa-agttttaacttttcatttttatattcgagctcaagatctctgattaaaattgaaagaaatt 106  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  32034232 gagccgagaaccatttgggcaacaatgttcactcttaagagttttaacttttcatttttatattcgagctcaaaatctctgattaaaactgaaagaaatt 32034133  T
Q  107 ctcaacttttggatgattaatctaaagaaagaactttttaaatctagaagaacaagtacaaatattgtggaatagtgccaattggcttgatggatgtcag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32034132 ctcaacttttggatgattaatctaaagaaagaactttttaaatctagaagaacaagtacaaatattgtgcaatagtgccaattggcttgatggatgtcag 32034033  T
Q  207 gtataatgaactttaatgtgaagcttctggccagcttgacagtggccattttcgctacaaatgaagtagaagtcccctgggttggtgaggttgatggaat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32034032 gtataatgaactttaatgtgaagcttctggccagcttgacagtggccatttttgctacaaatgaagtagaagtcccctgggttggtgaggttgatggaat 32033933  T
Q  307 cagagccagagtggtaaaaggcctttgcagaatttatgttgcagtgaatgtagtcttggtgactcacctccataacatcatgatattgcttgtgctacga 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32033932 cagagccagagtggtaaaaggcctttgcagaatttatgttgcagtgaatgtagtcttggtgactcacctccataacatcatgatattgcttgtggtacga 32033833  T
Q  407 gaaaactgcatgttgcatactaggttgttattaatcaactataatgtaaataaataagatttaaaatcccggtcgtaataacaatcacga--tctaatcc 504  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||  |||| |||    
T  32033832 gaaaactgcatgttgcatactacgttgttattaatcaactataatgtaaataattaagatttaaaatcccggtcgtagtaacaatcacgatttctattcc 32033733  T
Q  505 tatgaagaacgatagttaaatgcaactgcactaggtgaatcataggatcgcatagcgatcacacaacattaaaattataatgttatcgacctatggttca 604  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32033732 tatgaagaacgatagttaaatgcaactacactaggtgaatcataggatcgcatagcgatcacacaacattaaaattataatgttatcgacctatagttca 32033633  T
Q  605 ttttgcgttcttaaaacataatataaac 632  Q
    ||||||||||||||||||||||||||||    
T  32033632 ttttgcgttcttaaaacataatataaac 32033605  T

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