View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2755_high_6 (Length: 605)
Name: NF2755_high_6
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2755_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 10 - 588
Target Start/End: Complemental strand, 44969681 - 44969106
Alignment:
| Q |
10 |
attatactactaattattgttttgttttgcattgacccctcgactttatgatacatgttaccttacgacactagttatgggagctatagctggacatcat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44969681 |
attatactactaattattgttttgttttgcattgacccctcgactttatgatacatgttatcttacgacactagttatgggagctatagctggacatcat |
44969582 |
T |
|
| Q |
110 |
ataatga-gaggacactacactatgcaagcatttgnnnnnnntatattaaaatgaagaggaacaaaaactttaaagttatcagtttgacatgtttcgttt |
208 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44969581 |
ataatgaagaggacactacactatgcaagcatttgaaaaaaatatattaaaatgaggaggaacaaaaactttaaagttatcagtttaacatgtttc---- |
44969486 |
T |
|
| Q |
209 |
cacacaaagaatggaatatatgcaatgtcttcaaatcaactagaggttgtaaccacgagttctattgattggtggtcaccatatggatttaaaactcttg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44969485 |
-acacaaagaatggaatatatgcaatgtcttcaaatcaaccggaggttgtaaccacgagttctattgattggtggtcatcatatggatttaaaactcttg |
44969387 |
T |
|
| Q |
309 |
agctagccaagttggcagaaaagtatatctcaaccaataattag-ttcttttattgagaaagaacttggagtacatactcttatatctaaaatgtaaatg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44969386 |
agctagccaagttggcagaaaagtatatctcaaccaataattaggttcttttattgagaaagaacttggagtacatactcttatatctaaaatgtaaatg |
44969287 |
T |
|
| Q |
408 |
tgaacaagtttaattgagctagagcggacaaattggtttatattcactcaaatattcgtcaacaataacgattttctagtagctacaagctttaatgttc |
507 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44969286 |
tgaacaagtttaattgagctagaggggacaaattggtttatattcactcaaatattcgtcaacaataacgattttctagtagctacaagcattaatgttc |
44969187 |
T |
|
| Q |
508 |
gatactagcaaagccccaatagaaacaatgacatcatcaattcatgttaccaatgaaatccaaatagacaaacagagaaat |
588 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44969186 |
gatactagcaaagccccaatagaaacaatgacatcatcaattcatgttaccaatgaaatccaaatagacaaacagagaaat |
44969106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University