View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2755_low_12 (Length: 460)
Name: NF2755_low_12
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2755_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 22 - 444
Target Start/End: Complemental strand, 18968968 - 18968543
Alignment:
| Q |
22 |
actccctgccaacacagctcctaccactctttcttctctcattttagatctaaaaccaaagaaaatgcaaaccaatctcacactcactactctcttcctc |
121 |
Q |
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| T |
18968968 |
actccctgccaacacagctcctaccactctttcttctctcatttcagatctaaaaccaaagaaaatgcaaaccaatctcacactcactactctcttcctc |
18968869 |
T |
|
| Q |
122 |
tacttcttcatctcaactttctccacctccatcttagcccatgatgaagcccaagcccaagatctagtccattcctcctgcattcactcaaggtacccaa |
221 |
Q |
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| T |
18968868 |
tacttcttcatctcaactttctccacctccatcttagcccatgatgaagcccaaacccaagatctagtccattcctcctgcattcactcaaggtacccaa |
18968769 |
T |
|
| Q |
222 |
aactatgtcttcgaacactctccaactacaccggacccaccaaaagcccactagatatagcccaggctgcactacatgtaagcttagcccatgccaagag |
321 |
Q |
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| T |
18968768 |
aactatgtcttcgaacactctccaactacaccggacccaccaaaagcccactagacatagcacaagctgcacttcacataagcttagcccacgccaagag |
18968669 |
T |
|
| Q |
322 |
agtctccaagtatctacgctcttccataagtgaagccca---cagcagcagcagcttaagtaaacgccagcaggctgatctaagtgactgcaaagagcag |
418 |
Q |
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||||||||| |||||||||||||||| |||||||||||| ||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
18968668 |
agtctccaaatatctacgctcttccaaaagtgaagcccatggcagcaacagcagcttaagcaaacgccagcaggctggtctaagtgactgcaaagagcag |
18968569 |
T |
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| Q |
419 |
attgctgactcagtggatgaacttgg |
444 |
Q |
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| T |
18968568 |
attgctgactcagtggatgaacttgg |
18968543 |
T |
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