View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2755_low_14 (Length: 453)

Name: NF2755_low_14
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2755_low_14
NF2755_low_14
[»] chr3 (3 HSPs)
chr3 (1-437)||(1202126-1202562)
chr3 (1-437)||(25747549-25747968)
chr3 (252-339)||(45401802-45401889)
[»] chr6 (2 HSPs)
chr6 (1-437)||(19813204-19813641)
chr6 (1-437)||(32689494-32689942)
[»] chr1 (2 HSPs)
chr1 (1-244)||(26941215-26941458)
chr1 (379-437)||(26939229-26939287)
[»] chr2 (2 HSPs)
chr2 (1-258)||(25205739-25206002)
chr2 (284-437)||(25205587-25205740)
[»] chr4 (4 HSPs)
chr4 (1-223)||(47853561-47853783)
chr4 (8-223)||(47719961-47720176)
chr4 (263-332)||(47719832-47719901)
chr4 (268-332)||(47853847-47853911)
[»] chr5 (1 HSPs)
chr5 (374-429)||(11379682-11379737)


Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 1202126 - 1202562
Alignment:
Q  1 aaaagaaattcttacccctccattccaaatctttgctgcaatatgttggccaaaactcggcaacaaagacatgttcgaaggtcctccatcgtatccctcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1202126 aaaagaaattcttacccctccattccaaatctttgctgcaatatgttggccaaaactcggcaacaaagacgtgttcgaaggtcctccatcgtatccctcc 1202225  T
Q  101 tgaacaactcccacggaaggaggttgtgaaccagaggctgactgtgatgatggcatctcgatatcaatctgagactgggaactagagccatctggttcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1202226 tgaacaactcccacggaaggaggttgtgaaccagaggctgactgtgatgatggcatctcgatatcaatctgagactgggaactagagccatctggttcct 1202325  T
Q  201 ctctctgatcacgcccacgaccacgtctccttggcggagcgtttagaactcgctctttgcgaacaggagcatgcaatgcctccttaccacatcgtgtcct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1202326 ctctctgatcacgcccacgaccacgtctccttggcggagcgtttagaactcgctctttgcgaacaggagcatgcaatgcctccttaccacatcgtgtcct 1202425  T
Q  301 accaacatcttcattatccatatctacaacaacgaaaaaacaaattttaatccttcaagcattttgtacttaaatatggttccaaagttcaatgcattaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1202426 accaacatcttcattatccatatctacaacaacgaaaaaacaaattttaatccttcaaacattttgtacttaaatatggttccaaagttcaatgcattaa 1202525  T
Q  401 ctttcacaatgttcttaacatgtaagtgtaccttttg 437  Q
    |||||||||||||||||||||||||||||||||||||    
T  1202526 ctttcacaatgttcttaacatgtaagtgtaccttttg 1202562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 25747968 - 25747549
Alignment:
Q  1 aaaagaaattcttacccctccattccaaatctttgctgcaatatgttggccaaaactcggcaacaaagacatgt-----tcgaaggtcctccatcgtatc 95  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||     ||||||||||||||||||| |    
T  25747968 aaaagaaattcttacccctccattccaaatctttgctggaatatgttggccaaaactcgggaacaaagacatgtactgttcgaaggtcctccatcgtaac 25747869  T
Q  96 cctcctgaacaactcccacggaaggaggttgtgaaccagaggctgactgtgatgatggcatctcgatatcaatctgagactgggaactagagccatctgg 195  Q
    ||||||||||||||||||| |||||||| |||||| |||||||||||| |||||||       ||||||||||||||||||||||| |||||||||||||    
T  25747868 cctcctgaacaactcccacagaaggaggctgtgaatcagaggctgactatgatgat-------cgatatcaatctgagactgggaa-tagagccatctgg 25747777  T
Q  196 ttcctctctctgatcacgcccacgaccacgtc------tccttggcggagcgtttagaactcgctctttgcgaacaggagcatgcaatgcctccttacca 289  Q
    |||||||||  || |||||||| ||||| |||      ||||| || ||||||||||||||||||||||||| |||                    ||||    
T  25747776 ttcctctcttcgaccacgcccatgaccatgtccatgggtccttagcagagcgtttagaactcgctctttgcggaca--------------------acca 25747697  T
Q  290 catcgtgtcctaccaacatcttcattatccatatctacaacaacgaaaaaacaaattttaatccttcaagcattttgtacttaaatatggttccaaagtt 389  Q
    | || |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||    
T  25747696 cgtcatgtcctaccaacattttcattatccatatctacaacaacgaaaaaataaattttaatccttcaagaattttgtacttaaatatggttccaaaatt 25747597  T
Q  390 caatgcattaactttcacaatgttcttaacatgtaagtgtaccttttg 437  Q
    || |||||||| |||||||||||||||||| ||||||||||| |||||    
T  25747596 cattgcattaattttcacaatgttcttaacctgtaagtgtactttttg 25747549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 339
Target Start/End: Original strand, 45401802 - 45401889
Alignment:
Q  252 gctctttgcgaacaggagcatgcaatgcctccttaccacatcgtgtcctaccaacatcttcattatccatatctacaacaacgaaaaa 339  Q
    ||||| ||||||| | ||||| || || || |||||||  | |||||||||||||||||||||||||||||||||| |||| ||||||    
T  45401802 gctctatgcgaacggaagcatccattgacttcttaccatgtagtgtcctaccaacatcttcattatccatatctactacaaagaaaaa 45401889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 19813204 - 19813641
Alignment:
Q  1 aaaagaaattcttacccctccattccaaatctttgctgcaatatgttggccaaaactcggcaacaaagacatgttcgaaggtcctccatcgtatccctcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19813204 aaaagaaattcttacccctccattccaaatctttgctgcaatatgttggccaaaactcggcaacaaagacgtgttcgaaggtcctccatcgtatccctcc 19813303  T
Q  101 tgaacaactcccacggaaggaggttgtgaaccagaggctgactgtgatgatggcatctcgatatcaatctgagactgggaactagagccatctggttcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19813304 tgaacaactcccacggaaggaggttgtgaaccagaggctgactgtgatgatggcatctcgatatcaatctgagactgggaactagagccatctggttcct 19813403  T
Q  201 ctctctgatcacgcccacgaccacgtctccttggcggagcgtttagaactcgctctttgcgaacaggagcatgcaatgcctccttaccacatcgtgtcct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19813404 ctctctgatcacgcccacgaccacgtctccttggcggagcgtttagaactcgctctttgcgaacaggagcatgcaatgcctccttaccacatcgtgtcct 19813503  T
Q  301 accaacatcttcattatccatatctacaacaacga-aaaaacaaattttaatccttcaagcattttgtacttaaatatggttccaaagttcaatgcatta 399  Q
    ||||||||||||||||||||||||||||||||| |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19813504 accaacatcttcattatccatatctacaacaacaattttttttttttttaatccttcaagcattttgtacttaaatatggttccaaagttcaatgcatta 19813603  T
Q  400 actttcacaatgttcttaacatgtaagtgtaccttttg 437  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19813604 actttcacaatgttcttaacatgtaagtgtaccttttg 19813641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 32689494 - 32689942
Alignment:
Q  1 aaaagaaattcttacccctccattccaaatctttgctgcaatatgttggccaaaactcggcaacaaagacatgttcgaaggtcctccatcgtatccctcc 100  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  32689494 aaaagaaaatcttacacctccattccaaatctttgctgcaatatgttggccaaaactcggcaacaaagacttgtttgaaggtcctccatcgtatccctcc 32689593  T
Q  101 tgaacaactcccacggaaggaggttgtgaaccagaggctgactgtgatgatggcatctcgatatcaatctgagactgggaactagagccatctggttcct 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||    
T  32689594 tgaacaactcccacggaaggaggctgtgaaccagaggctgactgtgatgatggcatctcgatatcaatctgagactgggaactagagccacccagttcct 32689693  T
Q  201 ctctctgatcacgcccacga------------ccacgtctccttggcggagcgtttagaactcgctctttgcgaacaggagcatgcaatgcctccttacc 288  Q
    ||||| || |||||||||||            |||||||||||||| ||||||||| ||||| |||||||| | |||| |||||||||||||||||||||    
T  32689694 ctctccgaccacgcccacgaccacgtccacgtccacgtctccttggtggagcgtttggaacttgctctttggggacagaagcatgcaatgcctccttacc 32689793  T
Q  289 acatcgtgtcctaccaacatcttcattatccatatctacaacaacgaaaaaacaaattttaatccttcaagcattttgtacttaaatatggttccaaagt 388  Q
    ||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||  ||| |||||||||||||||    
T  32689794 acgccgtgtcctaccaacatcttcattatccatagctacaacaacgaaaaaacaaattttaatccttcaggaattttgtgattagatatggttccaaagt 32689893  T
Q  389 tcaatgcattaactttcacaatgttcttaacatgtaagtgtaccttttg 437  Q
    | | |||||||| ||| |||||||||||||| ||| |||||||||||||    
T  32689894 ttattgcattaattttaacaatgttcttaacctgtgagtgtaccttttg 32689942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 26941458 - 26941215
Alignment:
Q  1 aaaagaaattcttacccctccattccaaatctttgctgcaatatgttggccaaaactcggcaacaaagacatgttcgaaggtcctccatcgtatccctcc 100  Q
    |||||||||| |||||||||| ||||||||||||| |||||| |||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  26941458 aaaagaaattattacccctccgttccaaatctttgttgcaatttgtttgccaaaactcggcaacaaagacgtgtccgaaggtcctccaccgtatccctcc 26941359  T
Q  101 tgaacaactcccacggaaggaggttgtgaaccagaggctgactgtgatgatggcatctcgatatcaatctgagactgggaactagagccatctggttcct 200  Q
    ||||||| ||||||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  26941358 tgaacaaatcccacggaaggaggctgtgaaccagaggccgactgtaatgatggcatctcaatatcaatctgagactgggaactagagccttctggttcct 26941259  T
Q  201 ctctctgatcacgcccacgaccacgtctccttggcggagcgttt 244  Q
    ||||| || |||||||||| |||| | ||||||| |||||||||    
T  26941258 ctctccgaccacgcccacgtccacctgtccttggtggagcgttt 26941215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 437
Target Start/End: Complemental strand, 26939287 - 26939229
Alignment:
Q  379 gttccaaagttcaatgcattaactttcacaatgttcttaacatgtaagtgtaccttttg 437  Q
    ||||||||||||| |||||||| ||||||||||||| |||| ||||||| || ||||||    
T  26939287 gttccaaagttcattgcattaattttcacaatgttcataacctgtaagtctatcttttg 26939229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 25206002 - 25205739
Alignment:
Q  1 aaaagaaattcttacccctccattccaaatctttgctgcaatatgttggccaaaactcggcaacaaagacatgttcgaaggtcctccatcgtatccctcc 100  Q
    |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||| | |  ||||||||||||||||||||||      
T  25206002 aaaataaatttttaccccgccattccaaatctttgctgcaatatgttggccaaaatttggcaacaaagacgtatctgaaggtcctccatcgtatcccttt 25205903  T
Q  101 tgaacaactcccacggaaggaggttgtgaaccagaggctgactgtgatgatggcatctcgatatcaatctgagactgggaactagagccatctggttcct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||    
T  25205902 tgaacaactcccacggaaggaggttgtgaaccagaggctgactgtgatgatggcatctcgatatcaatctgagactgggaactagagccattcagttcct 25205803  T
Q  201 ctctctgatcacgcccacgaccacgtc------tccttggcggagcgtttagaactcgctcttt 258  Q
    ||||| || ||| ||||||||||||||      |||||||| ||||||||| |||| |||||||    
T  25205802 ctctccgaccacacccacgaccacgtccacatgtccttggcagagcgtttaaaacttgctcttt 25205739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 284 - 437
Target Start/End: Complemental strand, 25205740 - 25205587
Alignment:
Q  284 ttaccacatcgtgtcctaccaacatcttcattatccatatctacaacaacgaaaaaacaaattttaatccttcaagcattttgtacttaaatatggttcc 383  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||  ||||||||||||||    
T  25205740 ttaccacgtcgtgtcctaccaacatcttcattatccatatctataacaacgaaaaaacaaattttaatccttcaggaattttgtgtttaaatatggttcc 25205641  T
Q  384 aaagttcaatgcattaactttcacaatgttcttaacatgtaagtgtaccttttg 437  Q
    |||||| | ||| |||| ||  ||||| |||||||| ||  | |||||||||||    
T  25205640 aaagtttattgcgttaatttaaacaatattcttaacttgggattgtaccttttg 25205587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 47853561 - 47853783
Alignment:
Q  1 aaaagaaattcttacccctccattccaaatctttgctgcaatatgttggccaaaactcggcaacaaagacatgttcgaaggtcctccatcgtatccctcc 100  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| | |  ||||||||||   | || |||||     
T  47853561 aaaagaaattcttacctctccattccaaatcttggctgcaatatgttggccaaaattcggcaacaaagacgtctcagaaggtcctctgccatagccctct 47853660  T
Q  101 tgaacaactcccacggaaggaggttgtgaaccagaggctgactgtgatgatggcatctcgatatcaatctgagactgggaactagagccatctggttcct 200  Q
    ||||| ||||| ||||||||||| ||||| | |||  ||  || ||||||||||||||||||||||| ||||||||| ||||||||||| || ||| |||    
T  47853661 tgaaccactcctacggaaggaggctgtgagctagatacttcctttgatgatggcatctcgatatcaacctgagactgtgaactagagccttccggtccct 47853760  T
Q  201 ctctctgatcacgcccacgacca 223  Q
    | ||| || ||||||||||||||    
T  47853761 cgctcagaccacgcccacgacca 47853783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 47720176 - 47719961
Alignment:
Q  8 attcttacccctccattccaaatctttgctgcaatatgttggccaaaactcggcaacaaagacatgttcgaaggtcctccatcgtatccctcctgaacaa 107  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| | |  ||||||||||   | || ||||| ||||| |    
T  47720176 attcttacctctccattccaaatcttggctgcaatatgttggccaaaattcggcaacaaagacgtctcagaaggtcctctgccatagccctcttgaacca 47720077  T
Q  108 ctcccacggaaggaggttgtgaaccagaggctgactgtgatgatggcatctcgatatcaatctgagactgggaactagagccatctggttcctctctctg 207  Q
    |||| || |||||||||||||| |||||  ||  || ||||||||||||||||||||||| ||||||||  |||| |||||| || ||| |||| ||| |    
T  47720076 ctcctacagaaggaggttgtgagccagatacttcctttgatgatggcatctcgatatcaacctgagactatgaaccagagccttccggtccctcgctcag 47719977  T
Q  208 atcacgcccacgacca 223  Q
    | ||||||||||||||    
T  47719976 accacgcccacgacca 47719961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 332
Target Start/End: Complemental strand, 47719901 - 47719832
Alignment:
Q  263 acaggagcatgcaatgcctccttaccacatcgtgtcctaccaacatcttcattatccatatctacaacaa 332  Q
    |||| ||||||||||| ||||||||||  ||||||||||||||||||||| |||| ||||| ||| ||||    
T  47719901 acagaagcatgcaatgactccttaccatgtcgtgtcctaccaacatcttcgttattcatatatactacaa 47719832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 47853847 - 47853911
Alignment:
Q  268 agcatgcaatgcctccttaccacatcgtgtcctaccaacatcttcattatccatatctacaacaa 332  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||| |||| ||||| ||| ||||    
T  47853847 agcatgcaatgactccttaccatgtcgtgtcctaccaacatcttcgttattcatatatactacaa 47853911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 429
Target Start/End: Original strand, 11379682 - 11379737
Alignment:
Q  374 atatggttccaaagttcaatgcattaactttcacaatgttcttaacatgtaagtgt 429  Q
    |||| ||||||||||||  || ||||| |||||||||||||||||| |||||||||    
T  11379682 atatagttccaaagttccttgaattaattttcacaatgttcttaacctgtaagtgt 11379737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University