View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2755_low_17 (Length: 427)
Name: NF2755_low_17
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2755_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 7499937 - 7500346
Alignment:
| Q |
1 |
aaaacacatccaatccaattaccacaattgttctaaccatgaaaacctagtagatttaaatgaaatatttaagaattggtataaaccttttcaatcaaat |
100 |
Q |
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| T |
7499937 |
aaaacacatccaatccaattaccacaattgttctaaccatgaaaacctagtagatttaaatgaaatatttaaaaattggtataaaccttttcaatcaaat |
7500036 |
T |
|
| Q |
101 |
ataatcctctctccattttgaattgcattcacgagattaatgccagcttgcctccccagttctccggtcatacgctctattccaaactcaacaatcctca |
200 |
Q |
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| T |
7500037 |
ataatcctctctccattttgaattgcattcacgagattaatgccagcttgcctccccagttctccggtcatatgctctattccaaacacaacaatcctca |
7500136 |
T |
|
| Q |
201 |
cgtacaaccgatctcctccacctttccagcggcacgtgacattcacctgccatttttgccccaacatcatggtggagtaccccacctcaatcttcgtcaa |
300 |
Q |
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| T |
7500137 |
cgtacaaccgatctcctccacctttccagcggcacgtgacattcacctgccatttttgccccaacatcatggtggagtaccccacctcaatcttcgtcaa |
7500236 |
T |
|
| Q |
301 |
catctggttaacccaaagaggtttacaactagaatgaaacaagcctgcagcacggttttgtattgtgtcgataactacccaactcaacctcaaattttca |
400 |
Q |
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| T |
7500237 |
catctggttaacccaaagaggtttacaactagaatgaaacaagcctgcagcacggttttgtattgtgtcgataactacccaactcaacctcaaattttca |
7500336 |
T |
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| Q |
401 |
tgcaaatatt |
410 |
Q |
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| T |
7500337 |
tgcaaatatt |
7500346 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 27257839 - 27257797
Alignment:
| Q |
368 |
tcgataactacccaactcaacctcaaattttcatgcaaatatt |
410 |
Q |
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| T |
27257839 |
tcgataacaacccaactcaacctcaaattttcttgcaaatatt |
27257797 |
T |
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