View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2755_low_19 (Length: 382)
Name: NF2755_low_19
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2755_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 47 - 374
Target Start/End: Complemental strand, 1558359 - 1558032
Alignment:
| Q |
47 |
aatgaaaaacttcatagaagggaattttttaaacctaaacatcttatatgttagaatcttaaatgaaatcctgcataatttaaactccattagcactatt |
146 |
Q |
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| T |
1558359 |
aatgaaaaacttcatagaagggaattttttaaacctaaacatcttatatgttagaatcttaaatgaaatcctgcataatttaaactccattagcactatt |
1558260 |
T |
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| Q |
147 |
ttttataacccaataatttgaaacttgataaaaccacatgacagctgtaaaaactcatgttactacatttgctttatctcatcaacaacaaaacaaaaac |
246 |
Q |
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| T |
1558259 |
ttttataacccaataatttgaaacttgataaaaccacatgacagctgtaaaaactcatgttactacatttgctttatctcatcaacaacaaaacaaaaac |
1558160 |
T |
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| Q |
247 |
agnnnnnnnnatttagcatagaaaaagaatatggctataagccgacaaatgtaaactgttatcggaacatcgcaaataacaatggataaataatggtttg |
346 |
Q |
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| T |
1558159 |
agttttttttatttagcatagaaaaagaatatggctataagccgacaaatgtaaactgttatcggaacatcgcaaataacaatggataaataatggtttg |
1558060 |
T |
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| Q |
347 |
ctggcaagaacacacactcagtattatc |
374 |
Q |
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| T |
1558059 |
ctggcaagaacacacactcagtattatc |
1558032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 38981846 - 38981800
Alignment:
| Q |
95 |
tgttagaatcttaaatgaaatcctgcataatttaaactccattagca |
141 |
Q |
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| T |
38981846 |
tgttagaatcttaaattaaatcctgcataatttaaactccattagca |
38981800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 259 - 362
Target Start/End: Complemental strand, 23891488 - 23891386
Alignment:
| Q |
259 |
ttagcatagaaaaagaatatggctataagccgacaaatgtaaactgttatcggaacatcgcaaataacaatggataaataatggtttgctggcaagaaca |
358 |
Q |
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| T |
23891488 |
ttagcgtagaaaaaaaa-atggctataagcctacaaatgtgaactgttatcgaaacatcgcaactaacaatggataaataattgttttcaggcaagaaga |
23891390 |
T |
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| Q |
359 |
caca |
362 |
Q |
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|||| |
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| T |
23891389 |
caca |
23891386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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