View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2755_low_2 (Length: 724)
Name: NF2755_low_2
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2755_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 358 - 659
Target Start/End: Original strand, 46219526 - 46219826
Alignment:
| Q |
358 |
atcatgagtgtcaacggtggtgcaagtattgtgaaggaaaattattttcttttgagagaagcatactaaaatgaatgaatttattcacacttaaagatag |
457 |
Q |
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| T |
46219526 |
atcatgagtgtcaacggtggtgcaagtattgtgaaggaaaattattttcttttgagaaaagcatactaaaatgaatgaattgattcacacttaaagatag |
46219625 |
T |
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| Q |
458 |
ttgctccgtatatatcaaatttaaaataataatctttaatttaatgaaaaagttaatgttgaaagtaatgacactcgttcacacactaccttcaaatttt |
557 |
Q |
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| T |
46219626 |
ttgctccgtttatatcaaatttaaaataaaaa-ctttaatttaatgaaaaagttaatgtagaaagtaatgacactcgttcacacactaccttcaaatttt |
46219724 |
T |
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| Q |
558 |
tgagtaacgtatattgtcaaatccacttatatgatcattctaagtctactacaaggatctttgaactcccatcaaagccaaggtctactctttaaaatta |
657 |
Q |
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| T |
46219725 |
tgagtaacgtatgttgtcaaatccacttatatgatcattctaagtctactacgaggatctttgaactcccatcaaagccaaggtctactctttaaaatta |
46219824 |
T |
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| Q |
658 |
ct |
659 |
Q |
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|| |
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| T |
46219825 |
ct |
46219826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 232 - 366
Target Start/End: Original strand, 46218945 - 46219071
Alignment:
| Q |
232 |
ataaaataaaaaaggttggggtgttgtggcatctattgatccccattctaatttcatccatgattcactcgactcattgttttgaaagtctctgcgacaa |
331 |
Q |
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| T |
46218945 |
ataaaataaaaaaggttgggcggttgtggcatctattgatccccattttaatttcatccctgattcactcgactcatt--------agtctccgcgacaa |
46219036 |
T |
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| Q |
332 |
aaatagtcaggtgacatgttctcttgatcatgagt |
366 |
Q |
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| T |
46219037 |
aaatagtcaggtgacatgttctcttgatcatgagt |
46219071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 46218719 - 46218824
Alignment:
| Q |
9 |
gattattctataaattgtnnnnnnnncactctactttattttttagtcttaaagattttaattaacgattagtaattaaacctaaaaacttaggtatgta |
108 |
Q |
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| T |
46218719 |
gattattctataaattgtaaaaaaaacactctactttatttttcagtcttaaagattttaattaacgattagtaattaaacctaaaaacttaggtatgta |
46218818 |
T |
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| Q |
109 |
agaacc |
114 |
Q |
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| T |
46218819 |
cgaacc |
46218824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 686
Target Start/End: Complemental strand, 46220366 - 46220336
Alignment:
| Q |
656 |
tactaaatatttcaggtgagagggagaaaag |
686 |
Q |
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| T |
46220366 |
tactaaatatttcaggtgagagggagaaaag |
46220336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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