View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2755_low_22 (Length: 350)
Name: NF2755_low_22
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2755_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 1989820 - 1989490
Alignment:
| Q |
16 |
atcataatcaccattattaacccttggtgaaaaagcacaggaaccaccagcaccactgccgccgcca---------------acaccaccttggatattc |
100 |
Q |
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| T |
1989820 |
atcataatcaccattattaacccttggtgaaaaagcacaggaaccaccagcaccactgccgccgccaccaccaacaacaccaacaccaccttggatattc |
1989721 |
T |
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| Q |
101 |
tcataagacattaaaggattaaactttggactaatagggttctttggaaaagagggttgtgaccaaacattaccagaaggtgatgaagggttcctattga |
200 |
Q |
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| T |
1989720 |
tcataagacattaaaggattaaactttggactaatagggttctttgggaaagagggttgtgaccaaacattaccagaaggtgatgaagggttcctattga |
1989621 |
T |
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| Q |
201 |
agtcaaacccattacttcctctaggagaagattttgaaaaagggttattggaagatgaagtgattcttccaatagggttaagaggtgaaggtgaagaagg |
300 |
Q |
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| T |
1989620 |
agtcaaacccattacttcctctaggagaagattttgaaaaagggttattggaagatgaagtgattcttccaatagggttaagaggtgaaggtgaagaagg |
1989521 |
T |
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| Q |
301 |
ggtagataggttcatacccaaatgggtcttt |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
1989520 |
ggtagataggttcatacccaaatgggtcttt |
1989490 |
T |
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