View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2755_low_23 (Length: 345)
Name: NF2755_low_23
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2755_low_23 |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0102 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 222435 - 222098
Alignment:
| Q |
1 |
aatctaaagtatctcacctaaattaatatcgggaagaatcaaaacgaaatcttgaagaggaacacactctaagaacccaagccaacatcaccagagcaac |
100 |
Q |
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|||||||| || |||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||||||||||| || |||| |
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| T |
222435 |
aatctaaattacctcacctaaattaatatcgggaagaatcgaactgaaatcttgaagaggaacacactccaagatcccaagccaacatcaccggaacaac |
222336 |
T |
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| Q |
101 |
ccaagtaggttaagagnnnnnnnnnnnctcatgtaaacattgcttatcaaaagaagaaatgaaaactttgatcttcaaattttt-cttaaacctttcaca |
199 |
Q |
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| T |
222335 |
ccaagtaggttaaga-agaaaaaaaaactcatgtaaacattgcttatcaaaagaagaaatgaaaactttgatctccaaattttttcttaaacctttcaca |
222237 |
T |
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| Q |
200 |
catttcttcacatataagcagaataatataaatctaagacagggagaggattgacaatgtgacacttaattgcaaacaagctcatgtaaacaatttcctg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
222236 |
catttcttcacatataagcagaataatataaatctaagacagggagaggattgacaatgtgaaacttaattgcaaacaagctcatgtaaacaatttcctg |
222137 |
T |
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| Q |
300 |
tcacaagttataggctagaatattgtaatagttcatctc |
338 |
Q |
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| T |
222136 |
tcacaagttataggctagaatattgtaatagttcatctc |
222098 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 47079757 - 47079701
Alignment:
| Q |
55 |
aagaggaacacactctaagaacccaagccaacatcaccagagcaacccaagtaggtt |
111 |
Q |
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| T |
47079757 |
aagaggaacacattccaagatcccaagccaacaccaccagaccaacccaagtgggtt |
47079701 |
T |
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Target: scaffold0102 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 17127 - 17069
Alignment:
| Q |
46 |
gaaatcttgaagaggaacacactctaagaacccaagccaacatcaccagagcaacccaa |
104 |
Q |
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| T |
17127 |
gaaatcttgaagaggaacacactctaaactcccaagtcaacaccagcagaccaacccaa |
17069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 3743124 - 3743181
Alignment:
| Q |
49 |
atcttgaagaggaacacactctaagaacccaagccaacatcaccagagcaacccaagt |
106 |
Q |
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| T |
3743124 |
atcttgaggaggaacacactcttagatcccaagtcaatatcaccagaccaaccgaagt |
3743181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 5273606 - 5273666
Alignment:
| Q |
51 |
cttgaagaggaacacactctaagaacccaagccaacatcaccagagcaacccaagtaggtt |
111 |
Q |
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| T |
5273606 |
cttgaggaggagcacactctaaggtcccaagccaacaccaccaggccaacccaagtgggtt |
5273666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 31835252 - 31835192
Alignment:
| Q |
51 |
cttgaagaggaacacactctaagaacccaagccaacatcaccagagcaacccaagtaggtt |
111 |
Q |
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| T |
31835252 |
cttgaggaggagcacactccaagcacccaagccaacaccaccaggccaacccaagtgggtt |
31835192 |
T |
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