View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2755_low_25 (Length: 338)
Name: NF2755_low_25
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2755_low_25 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 4368743 - 4368516
Alignment:
| Q |
1 |
atgaagatgaagatggagatgaaaattaaatggaagattatgtttttattttgaaagcattctagattaaagatctagaatttgactccttgttttgggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4368743 |
atgaagatgaagatggagatgaaaattaaatggaagattatgtttttattttgaaagcattctagattaaagatctagaatttgactccttgttttgggt |
4368644 |
T |
|
| Q |
101 |
gtttacatcataccacttgttaaaagcttaatattatagcttaagttgttaatttgtgacttatcagttgtgtatgactttcctatggattttgaattaa |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4368643 |
gtttacatcataccacttgtgaaaagcttaatattatagcttaagttgttaatttgtgacttatcagttgtgtatgactttcctatggattttgaattaa |
4368544 |
T |
|
| Q |
201 |
gtttagtgtattgtctgaagtgattttc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4368543 |
gtttagtgtattgtctgaagtgattttc |
4368516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 4364355 - 4364127
Alignment:
| Q |
1 |
atgaagatgaagatggagatgaaaattaaatggaagattat-gtttttattttgaaag-cattctagattaaagatctagaatttgactccttgttttgg |
98 |
Q |
| |
|
||||||||| | ||| ||||||||||||||||||||||||| ||||||| ||||||| | ||||| ||||| |||||| ||||||||||||||||||| |
|
|
| T |
4364355 |
atgaagatggatatgaagatgaaaattaaatggaagattattgtttttaatttgaaaaactttctaatttaaatatctagtatttgactccttgttttgg |
4364256 |
T |
|
| Q |
99 |
gtgtttacatcataccacttgttaaaagcttaatattatagcttaagttgttaatttgtgacttatcagttgtgtatgactttcctatggattttgaatt |
198 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||||| | |||||||||| ||||||||||||||| | |||||||||| || ||||||| |||||||| |
|
|
| T |
4364255 |
gtgtttgcatcttgccacttgttaaaagcttaatactcaagcttaagtttgtaatttgtgacttatgaattgtgtatgaattacctatgg-gtttgaatt |
4364157 |
T |
|
| Q |
199 |
aagtttagtgtattgtctgaagtgattttc |
228 |
Q |
| |
|
|||| ||||||| |||||| ||| |||||| |
|
|
| T |
4364156 |
aagtgtagtgtactgtctgtagtaattttc |
4364127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 228
Target Start/End: Complemental strand, 4358917 - 4358751
Alignment:
| Q |
63 |
tagattaaagatctagaatttgactccttgttttgggtgtttacatcataccacttgttaaaagctt-aatattatagcttaagttgttaatttgtgact |
161 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| | | | |||||| ||||||||| |||| |||||||||||||||||| || ||||| |
|
|
| T |
4358917 |
tagattaaatatctagaatttgactccttgttttgggtgtttagagcttgtcacttgctaaaagcttaaatactatagcttaagttgttaa-ttctgact |
4358819 |
T |
|
| Q |
162 |
tatcagttgtgtatgactttcctatggattttgaa-ttaagtttagtgtattgtctgaagtgattttc |
228 |
Q |
| |
|
||| | ||||||| ||||||||||||| ||| ||| ||||||| |||||| ||| || ||||||||| |
|
|
| T |
4358818 |
tatgaattgtgtacgactttcctatgggtttcgaatttaagttcagtgtagtgtttgttgtgattttc |
4358751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 4388491 - 4388401
Alignment:
| Q |
115 |
acttgttaaaagcttaatattatagcttaagttgttaatttgtgacttatcagttgtgtatgactttcctatggattttgaattaagttta |
205 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | | |||||||||||||| | |||||| || ||||| ||||| |||||| ||||||||| |
|
|
| T |
4388491 |
acttgttaaaagcttaatactatagcttaaggtatgaatttgtgacttatgaattgtgtttggctttcttatgggttttgagttaagttta |
4388401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 4368457 - 4368425
Alignment:
| Q |
287 |
tgtgaattttgtaggattttgctatcctggtct |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
4368457 |
tgtgaattttgtaggattttgctatcctggtct |
4368425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 7555893 - 7555934
Alignment:
| Q |
137 |
tagcttaagttgttaatttgtgacttatcagttgtgtatgac |
178 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||||||||||||| |
|
|
| T |
7555893 |
tagcttaagttcttaatttttgacttatgagttgtgtatgac |
7555934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University