View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2755_low_27 (Length: 333)
Name: NF2755_low_27
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2755_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 13032318 - 13032034
Alignment:
| Q |
19 |
tgattaactctcgaaaaatcctcacttttttaatttgaatttctactctctcgtaacatacgagtatcagtttgaaattatattttttaggaaattgatt |
118 |
Q |
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| T |
13032318 |
tgattaactctcgaaaaatcctcacttttttaatttgaatttctactctctcgtaacatacgagtatcagtttgaaattatattttttaggaaattgatt |
13032219 |
T |
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| Q |
119 |
cttgattttttgttatctttcttgatacgatgatattaacaattggattttttcattattatgttttgtgatctttgtgttgacgtggtgtatccataaa |
218 |
Q |
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| T |
13032218 |
cttgattttttattatctttcttgatacgatgatattaacaattggattttttcattattatgttttgtgatctttgtgttgacgtggtgtatccataaa |
13032119 |
T |
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| Q |
219 |
attattatgtatgtgattttgcatcaaatttccttctcatataaaatttgttaattgaccgaaactgttcaatattttttcttca |
303 |
Q |
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| T |
13032118 |
attattatgtatgtgattttgcatcaaatttccttctcatataaaatttgttaattgaccgaaactgttcaatattttttcttca |
13032034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 159 - 302
Target Start/End: Original strand, 7418637 - 7418782
Alignment:
| Q |
159 |
aattggattttttcattattatgttttgtgatctttgtgttgacgtgg--tgtatccataaaattattatgtatgtgattttgcatcaaatttccttctc |
256 |
Q |
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| T |
7418637 |
aattggattttttcactattatgttttgtgatctttgtgttgacgtggggtgtatccataaaattattatgtgtgtgattttggatcaaatttcctcctc |
7418736 |
T |
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| Q |
257 |
atataaaatttgttaattgaccgaaactgttcaatattttttcttc |
302 |
Q |
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| T |
7418737 |
gtataaaatttgttaattgaccgaaactgttcaatattttttcttc |
7418782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 30 - 167
Target Start/End: Original strand, 7418482 - 7418622
Alignment:
| Q |
30 |
cgaaaaatcctcacttttttaatttgaatttctactctctcgtaacatacgagtatcagtttgaaattata---ttttttaggaaattgattcttgattt |
126 |
Q |
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| T |
7418482 |
cgaaaattcctcacttttttagtttgaatttttaccctctcgtgacatacgagtatctgtttgaaattataatttttcttaggaaattgactcttgattt |
7418581 |
T |
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| Q |
127 |
tttgttatctttcttgatacgatgatattaacaattggatt |
167 |
Q |
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| T |
7418582 |
tttattatatttcttgatacgatgatattaacagttggatt |
7418622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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