View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2755_low_3 (Length: 682)

Name: NF2755_low_3
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2755_low_3
NF2755_low_3
[»] chr7 (21 HSPs)
chr7 (20-347)||(3554227-3554557)
chr7 (393-671)||(3554597-3554875)
chr7 (20-205)||(3526675-3526860)
chr7 (20-205)||(3530709-3530894)
chr7 (20-205)||(3548011-3548196)
chr7 (450-656)||(3549063-3549269)
chr7 (450-669)||(3531782-3532001)
chr7 (452-660)||(3527345-3527553)
chr7 (240-335)||(15680830-15680927)
chr7 (240-335)||(18212974-18213071)
chr7 (240-335)||(21864829-21864926)
chr7 (240-335)||(20549812-20549909)
chr7 (238-305)||(4794951-4795020)
chr7 (285-335)||(39138465-39138515)
chr7 (240-302)||(2334314-2334378)
chr7 (240-302)||(20545185-20545249)
chr7 (285-335)||(7973111-7973161)
chr7 (240-335)||(21880173-21880270)
chr7 (240-307)||(24339702-24339771)
chr7 (240-274)||(40131940-40131974)
chr7 (291-335)||(3721114-3721158)
[»] chr1 (17 HSPs)
chr1 (240-335)||(22515828-22515925)
chr1 (240-319)||(37598868-37598949)
chr1 (285-335)||(38078649-38078699)
chr1 (240-335)||(46348324-46348421)
chr1 (240-307)||(47989557-47989626)
chr1 (240-335)||(51410046-51410143)
chr1 (241-335)||(29163323-29163419)
chr1 (287-335)||(22881606-22881654)
chr1 (241-335)||(1486646-1486747)
chr1 (289-335)||(14332634-14332680)
chr1 (240-335)||(18337350-18337447)
chr1 (240-307)||(32461394-32461463)
chr1 (285-335)||(36878482-36878532)
chr1 (263-335)||(7353456-7353531)
chr1 (240-273)||(28663682-28663715)
chr1 (240-281)||(34712324-34712365)
chr1 (285-341)||(1815272-1815328)
[»] chr8 (13 HSPs)
chr8 (241-335)||(3025572-3025668)
chr8 (240-335)||(18407740-18407837)
chr8 (285-331)||(33405372-33405418)
chr8 (285-345)||(31580115-31580176)
chr8 (244-345)||(38278120-38278224)
chr8 (292-335)||(12985413-12985456)
chr8 (288-345)||(4786329-4786387)
chr8 (240-335)||(14134720-14134817)
chr8 (285-335)||(25886982-25887031)
chr8 (240-307)||(28745558-28745627)
chr8 (290-335)||(20873090-20873135)
chr8 (290-335)||(31236570-31236615)
chr8 (243-332)||(5813616-5813707)
[»] chr4 (18 HSPs)
chr4 (241-345)||(4157160-4157266)
chr4 (241-335)||(4157457-4157553)
chr4 (240-335)||(28964189-28964286)
chr4 (240-345)||(16073405-16073512)
chr4 (288-335)||(8423709-8423756)
chr4 (240-335)||(12895215-12895312)
chr4 (240-335)||(23292927-23293024)
chr4 (285-335)||(35157973-35158023)
chr4 (243-345)||(12797282-12797386)
chr4 (287-335)||(54580013-54580061)
chr4 (290-345)||(36409505-36409560)
chr4 (290-345)||(36423671-36423726)
chr4 (240-335)||(2361916-2362013)
chr4 (285-335)||(40179624-40179674)
chr4 (286-335)||(10499259-10499308)
chr4 (285-334)||(40006025-40006074)
chr4 (240-345)||(34306745-34306852)
chr4 (287-335)||(49431047-49431095)
[»] chr3 (14 HSPs)
chr3 (240-335)||(8842350-8842447)
chr3 (240-335)||(55401096-55401193)
chr3 (240-335)||(8789489-8789588)
chr3 (240-335)||(40993276-40993373)
chr3 (240-335)||(20503486-20503583)
chr3 (240-335)||(35222959-35223056)
chr3 (239-345)||(7614356-7614464)
chr3 (240-305)||(26492146-26492213)
chr3 (240-319)||(13845466-13845547)
chr3 (291-335)||(7928471-7928515)
chr3 (254-335)||(10954973-10955056)
chr3 (287-335)||(18426970-18427018)
chr3 (287-335)||(24633391-24633439)
chr3 (291-335)||(49505148-49505192)
[»] chr6 (20 HSPs)
chr6 (240-335)||(7378000-7378097)
chr6 (240-335)||(17841530-17841627)
chr6 (240-335)||(33001230-33001327)
chr6 (240-335)||(34595155-34595252)
chr6 (242-331)||(32978842-32978933)
chr6 (240-307)||(10339055-10339124)
chr6 (240-335)||(13360314-13360410)
chr6 (240-345)||(28152109-28152216)
chr6 (240-332)||(4877967-4878060)
chr6 (240-282)||(9629470-9629512)
chr6 (240-345)||(9658889-9658998)
chr6 (240-335)||(13364646-13364743)
chr6 (285-335)||(19040373-19040423)
chr6 (240-307)||(24645530-24645599)
chr6 (240-335)||(28715316-28715413)
chr6 (240-302)||(17327591-17327655)
chr6 (292-341)||(21206898-21206947)
chr6 (291-335)||(426508-426552)
chr6 (291-335)||(5732504-5732548)
chr6 (287-345)||(30851612-30851669)
[»] chr5 (14 HSPs)
chr5 (240-335)||(21576686-21576783)
chr5 (285-335)||(28588662-28588712)
chr5 (240-335)||(42029773-42029870)
chr5 (240-328)||(32630676-32630766)
chr5 (288-335)||(43564902-43564949)
chr5 (285-335)||(23012396-23012446)
chr5 (240-307)||(39698601-39698670)
chr5 (240-274)||(9929685-9929719)
chr5 (301-335)||(30098347-30098381)
chr5 (285-335)||(30502376-30502426)
chr5 (285-335)||(30542719-30542769)
chr5 (286-335)||(16203784-16203833)
chr5 (241-274)||(18421779-18421812)
chr5 (287-335)||(15884009-15884057)
[»] chr2 (15 HSPs)
chr2 (241-335)||(2438661-2438757)
chr2 (285-336)||(5367212-5367263)
chr2 (240-335)||(20242668-20242765)
chr2 (240-307)||(34784912-34784981)
chr2 (291-335)||(18255974-18256018)
chr2 (240-333)||(28596492-28596587)
chr2 (291-335)||(31018611-31018655)
chr2 (288-335)||(5040755-5040802)
chr2 (240-308)||(26769570-26769640)
chr2 (240-335)||(18840954-18841051)
chr2 (297-335)||(28341869-28341907)
chr2 (240-308)||(11223794-11223863)
chr2 (291-335)||(20922922-20922966)
chr2 (294-345)||(31026705-31026757)
chr2 (299-335)||(39026839-39026875)
[»] scaffold0512 (1 HSPs)
scaffold0512 (240-307)||(4977-5046)
[»] scaffold0053 (1 HSPs)
scaffold0053 (240-335)||(8819-8916)
[»] scaffold0050 (1 HSPs)
scaffold0050 (287-335)||(70299-70347)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 347
Target Start/End: Original strand, 3554227 - 3554557
Alignment:
Q  20 ctatgcatgtatcattgccaaccaatttgatttgttgccctacttgattccacttacttttgccatcacaatcacccaatacaagtttattccttttgtt 119  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3554227 ctatgcatgcatcattgccaaccaatttgatttgttgccctacttgattccacttacttttcccatcacaatcacccaatacaagtttattccttttgtt 3554326  T
Q  120 cccttttacacattgtccacttaatgggtgatatattatgtaggatttgcttgaatttgaacttggttctgcaatttagaaaattagcattcactcacca 219  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3554327 cacttttacacattgtccacttaatgggtgatatattatgtaggatttgcttgaatttgaacttggttctgcaatttagaaaattagcattcactcacca 3554426  T
Q  220 tcacaaatatatgaaattattatgaagcacagacactcctcgaattagacgtgtctcagtgtcag--atgtgtcgtgtccgacaccgacatctataatta 317  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||    
T  3554427 tcacaaatgtatgaaattattatgaagcacagacactcttcgaattagacgtgtctcagtgttagatatgtgtcgtgtccgacaccgacatctataatta 3554526  T
Q  318 cattaaattatgtga-tttcttaaattatca 347  Q
    ||||||||||||| | |||||||||||||||    
T  3554527 cattaaattatgtaattttcttaaattatca 3554557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 393 - 671
Target Start/End: Original strand, 3554597 - 3554875
Alignment:
Q  393 tatatctatgtttcatatgtaaggtctaccaaattttagatttcaataatatttcaataaaaatgtcatacctaaaagcttcttatgcataagttgaaac 492  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3554597 tatatctatgtttcatatgtaaggtctaccaaattttaaatttcaataatatttcaataaaaatctcatacctaaaagcttcttatgcataagttgaaac 3554696  T
Q  493 ctttgaggaaattctagatatctaagtgtgcgaaaatcataactccatataccaaaagtctcactcacaataatttcattttttcttatatagtaagcac 592  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3554697 ctttgaggaaattcaatatatctaagtgtgcgaaaatcataactccatataccaaaagtctcactcacaataatttcattttttcttatatagtaagcac 3554796  T
Q  593 cttgtgcagcccacaatgcccaatccaaatccacacctagaagatatgccaacatacaagacaagaatttttcattcat 671  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3554797 cttgtgcagcccacaatgcccaatccaaatccacacctacaagatatgccaacatacaagacaagaatttttcattcat 3554875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 3526675 - 3526860
Alignment:
Q  20 ctatgcatgtatcattgccaaccaatttgatttgttgccctacttgattccacttacttttgccatcacaatcacccaatacaagtttattccttttgtt 119  Q
    ||||| ||||| ||||||||||||||||||||||||||||| |||||||||| ||||||   |  ||||||||||||||| |||||| |||  |  ||||    
T  3526675 ctatgtatgtaccattgccaaccaatttgatttgttgcccttcttgattccatttacttgcccactcacaatcacccaattcaagttcattgttagtgtt 3526774  T
Q  120 cccttttacacattgtccacttaatgggtgatatattatgtaggatttgcttgaatttgaacttggttctgcaatttagaaaatta 205  Q
    | |||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| | |||||||    
T  3526775 cactttcacacattgtccacttaatgggtgatatattatgtaggacttgcttgaatttaaacttgggtctgcaattaataaaatta 3526860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 3530709 - 3530894
Alignment:
Q  20 ctatgcatgtatcattgccaaccaatttgatttgttgccctacttgattccacttacttttgccatcacaatcacccaatacaagtttattccttttgtt 119  Q
    ||||| ||||| ||||||||||||||||||||||||||||| |||||||||| ||||||   |  ||||||||||||||| |||||| |||  |  ||||    
T  3530709 ctatgtatgtaccattgccaaccaatttgatttgttgcccttcttgattccatttacttgcccactcacaatcacccaattcaagttcattgttagtgtt 3530808  T
Q  120 cccttttacacattgtccacttaatgggtgatatattatgtaggatttgcttgaatttgaacttggttctgcaatttagaaaatta 205  Q
    | |||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| || ||| |||||    
T  3530809 cactttcacacattgtccacttaatgggtgatatattacgtaggacttgcttgaatttgaacttggttctgcatttaagacaatta 3530894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 3548011 - 3548196
Alignment:
Q  20 ctatgcatgtatcattgccaaccaatttgatttgttgccctacttgattccacttacttttgccatcacaatcacccaatacaagtttattccttttgtt 119  Q
    ||||| ||||| ||||||||||||||||||| ||||||||| |||||||||| ||||||   |  ||||||| ||||||| |||||| |||  |  | ||    
T  3548011 ctatgtatgtaccattgccaaccaatttgatatgttgcccttcttgattccatttacttgcccactcacaatgacccaattcaagttcattgttactatt 3548110  T
Q  120 cccttttacacattgtccacttaatgggtgatatattatgtaggatttgcttgaatttgaacttggttctgcaatttagaaaatta 205  Q
    | |||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  3548111 cactttcacacattgtccacttaatggatgatatattatgtaggacttgcttgaatttgagcttggttctgcaattaagaaaatta 3548196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 450 - 656
Target Start/End: Original strand, 3549063 - 3549269
Alignment:
Q  450 taaaaatgtcatacctaaaagcttcttatgcataagttgaaacctttgaggaaattctagatatctaagtgtgcgaaaatcataactccatataccaaaa 549  Q
    |||||||| |||||||| ||||||||| |||| |||||||||||||||||| |||||| |||||| |||||  | |||||||  |||||||| |||| ||    
T  3549063 taaaaatgccatacctagaagcttcttctgcaaaagttgaaacctttgagggaattcttgatatcgaagtgaactaaaatcaatactccataaaccataa 3549162  T
Q  550 gtctcactcacaataatttcattttttcttatatagtaagcaccttgtgcagcccacaatgcccaatccaaatccacacctagaagatatgccaacatac 649  Q
       || ||||||||| |||| |||| ||| |||||||||| |||||||||||||||||| |||||||| |||||||| ||   |||||| ||||| ||||    
T  3549163 tgttccctcacaatattttctttttctctaatatagtaagaaccttgtgcagcccacaaagcccaatctaaatccactccaccaagataagccaaaatac 3549262  T
Q  650 aagacaa 656  Q
    | |||||    
T  3549263 atgacaa 3549269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 450 - 669
Target Start/End: Original strand, 3531782 - 3532001
Alignment:
Q  450 taaaaatgtcatacctaaaagcttcttatgcataagttgaaacctttgaggaaattctagatatctaagtgtgcgaaaatcataactccatataccaaaa 549  Q
    |||||||| |||||||| ||||||||| || | ||||||||||||||||||||| ||| |||||| |||||    |||||||  | |||||| |||| ||    
T  3531782 taaaaatgacatacctagaagcttcttttggacaagttgaaacctttgaggaaaatctggatatcgaagtgatttaaaatcaatattccatagaccataa 3531881  T
Q  550 gtctcactcacaataatttcattttttcttatatagtaagcaccttgtgcagcccacaatgcccaatccaaatccacacctagaagatatgccaacatac 649  Q
      |||||||||| || |||| |||| ||| |||||||||| ||||||||||| ||| || ||||||||||| ||||| ||   |||||| || |||||||    
T  3531882 tgctcactcacattactttccttttctctaatatagtaagaaccttgtgcagtccataaagcccaatccaagtccaccccagcaagataagctaacatac 3531981  T
Q  650 aagacaagaatttttcattc 669  Q
    | ||||||||| ||| ||||    
T  3531982 atgacaagaatctttgattc 3532001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 452 - 660
Target Start/End: Original strand, 3527345 - 3527553
Alignment:
Q  452 aaaatgtcatacctaaaagcttcttatgcataagttgaaacctttgaggaaattctagatatctaagtgtgcgaaaatcataactccatataccaaaagt 551  Q
    |||||| |||||||| ||||||||| |||| ||||||||| ||||||| ||| ||| |||||| |||||    |||||||  | |||||||||||||||     
T  3527345 aaaatgacatacctagaagcttcttttgcacaagttgaaatctttgagaaaaatctggatatcgaagtgatttaaaatcaatattccatataccaaaagg 3527444  T
Q  552 ctcactcacaataatttcattttttcttatatagtaagcaccttgtgcagcccacaatgcccaatccaaatccacacctagaagatatgccaacatacaa 651  Q
    ||||||| || || |||| || | ||| |||||||||| ||||||||||| ||| || ||||||||||| || || ||   |||||| || ||||||||     
T  3527445 ctcactcgcattactttctttatctctaatatagtaagaaccttgtgcagtccataaagcccaatccaagtcaaccccagcaagataagctaacatacat 3527544  T
Q  652 gacaagaat 660  Q
    |||||||||    
T  3527545 gacaagaat 3527553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 15680927 - 15680830
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| |||||||||||||||||||||||||| ||||| ||   |||||||||||||||||||||  |||||||||| |||||||||||||||    
T  15680927 tatgaagcacggacactcctcgaattagacgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactaaattatgtgattt 15680830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 18212974 - 18213071
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||||||||||||| || || |||||| | ||||||||   | |||||||||||||||||||  |||||||||| |||||||||||||||    
T  18212974 tatgaagcacagacactcctcggataaggcgtgtccccgtgtcagaaaggggtcgtgtccgacaccgacacatataattacactaaattatgtgattt 18213071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 21864926 - 21864829
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtc--agatgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||||||||||||||||||||||||||| | |||||  | | ||||||||||||||| |||||  | |||||||| |||||||| ||||||    
T  21864926 tatgaagcacagacactcctcgaattagacgtgtcccggtgtcggacacgtgtcgtgtccgacagcgacacttgtaattacactaaattatatgattt 21864829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 20549909 - 20549812
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcaga--tgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| | ||||||||| ||||| ||||||||| |||| ||  ||||| ||||||||||||||||  |||||||||| | ||||| |||||||    
T  20549909 tatgaagcacgggcactcctcggattaggcgtgtctcattgtcggacatgtgttgtgtccgacaccgacacatataattacactgaattacgtgattt 20549812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 238 - 305
Target Start/End: Complemental strand, 4795020 - 4794951
Alignment:
Q  238 attatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccga 305  Q
    ||||||||||||||||||| || | ||||||||||| |  |||||||||  |||||||||||||||||||    
T  4795020 attatgaagcacagacacttcttggattagacgtgtttaggtgtcagatacgtgtcgtgtccgacaccga 4794951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 39138515 - 39138465
Alignment:
Q  285 atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||| ||||||||||||||||||| |||||||||| | |||||||||||||    
T  39138515 atgtatcgtgtccgacaccgacatatataattacactgaattatgtgattt 39138465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 240 - 302
Target Start/End: Complemental strand, 2334378 - 2334314
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtc--agatgtgtcgtgtccgacac 302  Q
    |||||| ||| ||||||||||| ||||||||||| ||||||||  | ||||||||||||||||||    
T  2334378 tatgaaacacggacactcctcggattagacgtgtttcagtgtcggacatgtgtcgtgtccgacac 2334314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 20545185 - 20545249
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtc--agatgtgtcgtgtccgacac 302  Q
    ||||||||||||||||||||||||||| ||||||| | |||||  | ||||||||||| ||||||    
T  20545185 tatgaagcacagacactcctcgaattaaacgtgtccccgtgtcggacatgtgtcgtgtacgacac 20545249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 7973111 - 7973161
Alignment:
Q  285 atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||||  ||||| |||| | ||||||||||||||||||||||||    
T  7973111 atgtgtcgtgtctcacaccaacatttgtaattacattaaattatgtgattt 7973161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 21880270 - 21880173
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcaga--tgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| |||||| |||| ||||| ||||||   ||||| ||  ||||||||||||||||||||||  | |||||||| | |||||||| ||||    
T  21880270 tatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtaattt 21880173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 24339771 - 24339702
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgaca 307  Q
    |||||||||| | ||||||||| ||||| |||||| | ||||| |||  |||||||||||||||||||||    
T  24339771 tatgaagcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgaca 24339702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 40131940 - 40131974
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtc 274  Q
    |||||||||||||||||||||| ||||||||||||    
T  40131940 tatgaagcacagacactcctcggattagacgtgtc 40131974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 3721158 - 3721114
Alignment:
Q  291 cgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||||||||  |||||||| | |||||||||||||||    
T  3721158 cgtgtccgacaccgacacatataattatactaaattatgtgattt 3721114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 22515828 - 22515925
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| ||||||||||| ||||| |||||||| ||||| |||  |||||||||||||||||||||  | |||||||| |||||||||||||||    
T  22515828 tatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatatgtgtcgtgtccgacaccgacacttgtaattacactaaattatgtgattt 22515925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 37598949 - 37598868
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattaca 319  Q
    |||||||||| ||||||||||| ||||| |||||| || |||| ||   |||||||||||||||||||||  ||||||||||    
T  37598949 tatgaagcacggacactcctcggattaggcgtgtcccattgtcggacacgtgtcgtgtccgacaccgacacttataattaca 37598868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 38078649 - 38078699
Alignment:
Q  285 atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||||||||||||||  | |||||||||| |||||||||||||    
T  38078649 atgtgtcgtgtccgacaccgacacttgtaattacattgaattatgtgattt 38078699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 46348324 - 46348421
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| ||||| ||||| || || |||||||| ||||| ||   |||||||||||||||||||||  | |||||||| |||||||| ||||||    
T  46348324 tatgaagcacggacacacctcggatcaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatatgattt 46348421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 47989626 - 47989557
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcaga--tgtgtcgtgtccgacaccgaca 307  Q
    |||||||||| ||||||||||| ||||| |||||| |  |||||||  ||||||||||||||||||||||    
T  47989626 tatgaagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgaca 47989557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 51410143 - 51410046
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||  | |||||| | ||||| |||||||| ||||| |||  |||||||||||||||||||||  | |||||||| | |||||||||||||    
T  51410143 tatgaagcacgaatactccttggattaggcgtgtctcggtgtcggatacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgattt 51410046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 335
Target Start/End: Original strand, 29163323 - 29163419
Alignment:
Q  241 atgaagcacagacactcctcgaattagacgtgtctcagtgtcag--atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||  ||||| |||  ||||| |||||| | |||||||  | |||||||||||||||||||||  |||||||| ||| |||||||||||||    
T  29163323 atgaagcacgaacacttctctgattagccgtgtcccggtgtcaggcacgtgtcgtgtccgacaccgacacatataattaaattgaattatgtgattt 29163419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 22881606 - 22881654
Alignment:
Q  287 gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||||||||||||  | |||||||| |||||||||||||||    
T  22881606 gtgtcgtgtccgacaccgacacttgtaattacactaaattatgtgattt 22881654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 335
Target Start/End: Original strand, 1486646 - 1486747
Alignment:
Q  241 atgaagcacagacactcctcgaattagacgtgtctcagtgtc--agatgtgtcgtgtc-----cgacaccgacatctataattacattaaattatgtgat 333  Q
    ||||||||||||||||||||| ||||| |||||| | |||||  | | ||||||||||     |||||||||||  |||||||||| | |||||||||||    
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttataattacactgaattatgtgat 1486745  T
Q  334 tt 335  Q
    ||    
T  1486746 tt 1486747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 14332634 - 14332680
Alignment:
Q  289 gtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||||||||| |  |||||||||| |||||||||||||||    
T  14332634 gtcgtgtccgacaccgagacatataattacactaaattatgtgattt 14332680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 18337447 - 18337350
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| ||||||||||| || || | |||| ||||||| ||   |||| ||||||||||||||||  | |||||||| | |||||||||||||    
T  18337447 tatgaagcacggacactcctcggatcaggcatgtcccagtgtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaattatgtgattt 18337350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 32461394 - 32461463
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgaca 307  Q
    |||||||||| |||||| || | ||||| |||||| ||||||||||   |||||||||||||||||||||    
T  32461394 tatgaagcacggacacttcttggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacaccgaca 32461463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 36878532 - 36878482
Alignment:
Q  285 atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||| ||||||| |||||||||| ||||||||||| | |||||||||||||    
T  36878532 atgtttcgtgtcagacaccgacacctataattacactgaattatgtgattt 36878482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 7353456 - 7353531
Alignment:
Q  263 attagacgtgtctcagtgtcagat---gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||| |||||||||||||| ||    ||||| ||| |||||||||||| |||||||||| |||||||||| ||||    
T  7353456 attaggcgtgtctcagtgtcggaaaacgtgtcatgttcgacaccgacatatataattacactaaattatgtaattt 7353531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 28663715 - 28663682
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgt 273  Q
    |||||||||||||||||||||||||||| |||||    
T  28663715 tatgaagcacagacactcctcgaattaggcgtgt 28663682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 34712324 - 34712365
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgt 281  Q
    |||||||||| ||||||||| |||||||||||||| ||||||    
T  34712324 tatgaagcacggacactccttgaattagacgtgtcccagtgt 34712365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 1815328 - 1815272
Alignment:
Q  285 atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgatttcttaaa 341  Q
    |||||||||||| ||||||||||  | |||||||| | ||||||||||||| |||||    
T  1815328 atgtgtcgtgtcggacaccgacacttgtaattacactgaattatgtgattttttaaa 1815272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 241 - 335
Target Start/End: Complemental strand, 3025668 - 3025572
Alignment:
Q  241 atgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||| ||||||||||| ||||| |||||| ||||||||||   |||||||||||||||| |||| ||||||||||| | |||||||||||||    
T  3025668 atgaagcacggacactcctcggattagccgtgtcacagtgtcagacacgtgtcgtgtccgacactgacacctataattacactgaattatgtgattt 3025572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 18407837 - 18407740
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcaga--tgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| |||||||||| |||||| ||||||  |||||| ||  ||||||||||||| || |||||  | |||||||| | |||||||||||||    
T  18407837 tatgaagcacggacactcctccaattaggcgtgtcctagtgtcggacatgtgtcgtgtccggcagcgacacttgtaattacactgaattatgtgattt 18407740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 33405372 - 33405418
Alignment:
Q  285 atgtgtcgtgtccgacaccgacatctataattacattaaattatgtg 331  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||    
T  33405372 atgtgtcgtgtccgacaccgacacatataattacactaaattatgtg 33405418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 31580115 - 31580176
Alignment:
Q  285 atgtgtcgtgtccgacaccgacatctataattacattaaattatgtga-tttcttaaattat 345  Q
    |||||||| |||||||| ||||| ||||||||||| | |||||||||| |||||||||||||    
T  31580115 atgtgtcgcgtccgacatcgacacctataattacactcaattatgtgattttcttaaattat 31580176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 244 - 345
Target Start/End: Original strand, 38278120 - 38278224
Alignment:
Q  244 aagcacagacactcctcgaattagacgtgtctcagtgtcaga--tgtgtcgtgtccgacaccgacatctataattacattaaattatgtga-tttcttaa 340  Q
    ||||||||||||||||| |||||||| || ||| | ||  ||  ||| |||||||| ||||||| |  |||||||| |||||||||||||| ||||||||    
T  38278120 aagcacagacactcctcaaattagacatgactcggcgtaggacatgtatcgtgtccaacaccgatacgtataattatattaaattatgtgattttcttaa 38278219  T
Q  341 attat 345  Q
    |||||    
T  38278220 attat 38278224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 12985456 - 12985413
Alignment:
Q  292 gtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||||||||| ||| |||||||| |||||||||||||    
T  12985456 gtgtccgacaccgacatatatgattacattgaattatgtgattt 12985413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 345
Target Start/End: Original strand, 4786329 - 4786387
Alignment:
Q  288 tgtcgtgtccgacaccgacatctataattacattaaattatgtga-tttcttaaattat 345  Q
    |||||| |||||||||||||  |||||||||| | |||||||||| |||||||||||||    
T  4786329 tgtcgtatccgacaccgacacatataattacactgaattatgtgattttcttaaattat 4786387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 14134817 - 14134720
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||| ||| ||||||||||||||||| ||||||   ||| | ||   |||||||||  ||||||||||| |||||||||| | |||||||||||||    
T  14134817 tatgaaacacggacactcctcgaattaggcgtgtcctggtgacggacacgtgtcgtgtttgacaccgacatatataattacactgaattatgtgattt 14134720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 25886982 - 25887031
Alignment:
Q  285 atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||||||||| ||||  ||||||||||||||||||||| ||||    
T  25886982 atgtgtcgtgtccgacac-gacacttataattacattaaattatgtaattt 25887031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 28745627 - 28745558
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgaca 307  Q
    |||||||||| ||||||||| ||||||||| |||||| ||| | ||   |||||||||||||||||||||    
T  28745627 tatgaagcacggacactccttgaattagacttgtctcggtgacggacaggtgtcgtgtccgacaccgaca 28745558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 20873135 - 20873090
Alignment:
Q  290 tcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||||||||||  | |||||||| |||||||||||||||    
T  20873135 tcgtgtccgacaccgacacttgtaattacactaaattatgtgattt 20873090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 31236570 - 31236615
Alignment:
Q  290 tcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||| ||||||||  |||||||||||| |||||||||||||    
T  31236570 tcgtgtccgtcaccgacacatataattacattgaattatgtgattt 31236615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 243 - 332
Target Start/End: Complemental strand, 5813707 - 5813616
Alignment:
Q  243 gaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtga 332  Q
    ||||||| |||||||||| |||||| |||||| | ||||| ||   |||||||||||||||||||||  | || ||||| |||| |||||||    
T  5813707 gaagcacggacactcctccaattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtatttacactaaaatatgtga 5813616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 241 - 345
Target Start/End: Complemental strand, 4157266 - 4157160
Alignment:
Q  241 atgaagcacagacactcctcgaattagacgtgtctcagtgtcaga--tgtgtcgtgtccgacaccgacatctataattacattaaattatgtgatttctt 338  Q
    |||||||||||||||||||||||||||  || |||| ||||| ||  ||||||||||||||||||||||  | ||||| || ||||||||||||||| |     
T  4157266 atgaagcacagacactcctcgaattaggtgtttctcggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattgcactaaattatgtgatttttc 4157167  T
Q  339 aaattat 345  Q
    |||||||    
T  4157166 aaattat 4157160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 241 - 335
Target Start/End: Complemental strand, 4157553 - 4157457
Alignment:
Q  241 atgaagcacagacactcctcgaattagacgtgtctcagtgtcaga--tgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||| |||||||||||||||||| ||| |||| ||||| ||  ||||||||||||||||||||||  | ||||| || |||||||||||||||    
T  4157553 atgaagcatagacactcctcgaattaggcgtttctcggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattgcactaaattatgtgattt 4157457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 28964189 - 28964286
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||  ||||||||||| ||||| |||||| ||||||| |||  |||||||||||||||| ||||  | |||||||| | |||||||||||||    
T  28964189 tatgaagcatggacactcctcggattaggcgtgtcccagtgtcggatatgtgtcgtgtccgacacagacacttgtaattacactgaattatgtgattt 28964286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 240 - 345
Target Start/End: Complemental strand, 16073512 - 16073405
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcaga--tgtgtcgtgtccgacaccgacatctataattacattaaattatgtgatttct 337  Q
    |||||||||  ||||||||||| ||||| ||||||| |||||| ||  ||| ||||||||||||||||||  | |||||||| | ||||||| ||||| |    
T  16073512 tatgaagcatggacactcctcggattaggcgtgtcttagtgtcggacatgtatcgtgtccgacaccgacacttgtaattacactgaattatgcgattttt 16073413  T
Q  338 taaattat 345  Q
     |||||||    
T  16073412 caaattat 16073405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 8423709 - 8423756
Alignment:
Q  288 tgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||||||||||||| |||||||||| | |||||||||||||    
T  8423709 tgtcgtgtccgacaccgacatttataattacactgaattatgtgattt 8423756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 12895215 - 12895312
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagatg--tgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||  |||||||||| ||||| |||||| |  |||| |||   ||||||||||||||||||||  ||||||||||  ||||||||||||||    
T  12895215 tatgaagcacgaacactcctcggattaggcgtgtcccgatgtcggatacatgtcgtgtccgacaccgacacttataattacacaaaattatgtgattt 12895312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 23292927 - 23293024
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| ||||||||||| ||||| |||||| | ||||| ||   |||||||||||||||||||||  | |||||| | | |||||||||||||    
T  23292927 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattatactgaattatgtgattt 23293024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 35157973 - 35158023
Alignment:
Q  285 atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||| ||||||||||  |||||||||| |||||||||||||||    
T  35157973 atgtgtcgtgtcagacaccgacacttataattacactaaattatgtgattt 35158023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 243 - 345
Target Start/End: Original strand, 12797282 - 12797386
Alignment:
Q  243 gaagcacagacactcctcgaattagacgtgtctcagtgtcaga--tgtgtcgtgtccgacaccgacatctataattacattaaattatgtgatttcttaa 340  Q
    |||||||  ||| |||||| ||||||| |||| | ||||||||  ||| ||||||||||||||||||  | |||||||| | ||||||||||||| | ||    
T  12797282 gaagcacgaacattcctcggattagacttgtcccggtgtcagacatgtatcgtgtccgacaccgacacttgtaattacactgaattatgtgatttttcaa 12797381  T
Q  341 attat 345  Q
    |||||    
T  12797382 attat 12797386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 54580013 - 54580061
Alignment:
Q  287 gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||||||||||||  |||||||||| | |||||||||||||    
T  54580013 gtgtcgtgtccgacaccgacacttataattacactgaattatgtgattt 54580061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 345
Target Start/End: Original strand, 36409505 - 36409560
Alignment:
Q  290 tcgtgtccgacaccgacatctataattacattaaattatgtgatttcttaaattat 345  Q
    |||||| ||||||||||| ||||||||||| |||||||||||| || || ||||||    
T  36409505 tcgtgttcgacaccgacacctataattacactaaattatgtgactttttcaattat 36409560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 345
Target Start/End: Original strand, 36423671 - 36423726
Alignment:
Q  290 tcgtgtccgacaccgacatctataattacattaaattatgtgatttcttaaattat 345  Q
    |||||| ||||||||||| ||||||||||| |||||||||||| || || ||||||    
T  36423671 tcgtgttcgacaccgacacctataattacactaaattatgtgactttttcaattat 36423726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 2361916 - 2362013
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| ||||||| ||  |||||  ||||||| ||||||||   | |||||||||||||||||||  | |||||||| |||||||||| ||||    
T  2361916 tatgaagcacggacactcgtcagattaggtgtgtctcggtgtcagacacgagtcgtgtccgacaccgacacttttaattacactaaattatgtaattt 2362013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 40179624 - 40179674
Alignment:
Q  285 atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||||||||||||||   |||||||||| | |||||||||||||    
T  40179624 atgtgtcgtgtccgacaccgacgcatataattacactgaattatgtgattt 40179674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 10499259 - 10499308
Alignment:
Q  286 tgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||| ||||||||| ||||  |||||||||| |||||||||||||||    
T  10499259 tgtgtcgggtccgacactgacacatataattacactaaattatgtgattt 10499308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 40006074 - 40006025
Alignment:
Q  285 atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgatt 334  Q
    ||||||||||| ||| | |||||| ||||||||||| |||||||||||||    
T  40006074 atgtgtcgtgttcgatatcgacatatataattacataaaattatgtgatt 40006025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 240 - 345
Target Start/End: Original strand, 34306745 - 34306852
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgatttct 337  Q
    ||||||||||  ||| |||||  ||||| |||||||| ||||| ||   |||||||||||||||||||||  | |||||||| || ||||| |||||| |    
T  34306745 tatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactacattatctgattttt 34306844  T
Q  338 taaattat 345  Q
     |||||||    
T  34306845 caaattat 34306852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 49431095 - 49431047
Alignment:
Q  287 gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||||||||||||  | |||||||| | |||||||||||||    
T  49431095 gtgtcgtgtccgacaccgacacttttaattacactgaattatgtgattt 49431047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 8842447 - 8842350
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtc--agatgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| ||||||||||| ||||| ||||||||| | ||  | |||||||||||| ||||||||||| ||||||||||  ||||||||||||||    
T  8842447 tatgaagcacggacactcctcggattaggcgtgtctcaatatctaacatgtgtcgtgtctgacaccgacatatataattacaccaaattatgtgattt 8842350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 55401193 - 55401096
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| ||||||||||| ||||| |||||||| ||||| ||   |||||||||||||||||||||  | |||||||| |||||||||||||||    
T  55401193 tatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatgtgattt 55401096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 8789489 - 8789588
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcaga----tgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| ||||||||||| ||||| |||||||| ||||| ||    ||||||||||||||||||||||  ||||||||||   |||||||||||||    
T  8789489 tatgaagcacggacactcctcggattaggcgtgtctcggtgtccgacatgtgtgtcgtgtccgacaccgacacatataattacacggaattatgtgattt 8789588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 40993276 - 40993373
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcaga--tgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||  ||||||||||| ||||| |||||| | ||||| ||  ||||||||||||||||||||||  |||||||||| | |||||||||||||    
T  40993276 tatgaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattatgtgattt 40993373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 20503583 - 20503486
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcag--atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| ||||||||||| ||||| |||||| | |||||||  ||||||||||||| |||||||||  | |||||||| | |||||||| ||||    
T  20503583 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtcattt 20503486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 35223056 - 35222959
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| ||||||||||| || |  |||||| | ||||||||   ||||| |||||||||||||||  |||||||||||| |||||||||||||    
T  35223056 tatgaagcacggacactcctcggataaagcgtgtccccgtgtcagacacgtgtcatgtccgacaccgacacatataattacattgaattatgtgattt 35222959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 345
Target Start/End: Original strand, 7614356 - 7614464
Alignment:
Q  239 ttatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat-gtgtcgtgtccgacaccgacatctataattacattaaattatgtga-tttc 336  Q
    |||||||||||||||| || ||  ||||| |||||||   |||||||  ||| ||||| |||||||||||| |||||||| | | |||||||||| ||||    
T  7614356 ttatgaagcacagacattcttcagattaggcgtgtcttgatgtcagaccgtgccgtgttcgacaccgacatatataattatactgaattatgtgattttc 7614455  T
Q  337 ttaaattat 345  Q
    |||||||||    
T  7614456 ttaaattat 7614464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 26492146 - 26492213
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcag--atgtgtcgtgtccgacaccga 305  Q
    |||||||| | |||| |||||| |||||||||||||  |||||||  |||||||||||||||||||||    
T  26492146 tatgaagcgcggacattcctcggattagacgtgtcttggtgtcagacatgtgtcgtgtccgacaccga 26492213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 13845466 - 13845547
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattaca 319  Q
    |||||||||| ||||||||| | || || |||||||| ||||||||   || ||||||||||||||||||  ||||||||||    
T  13845466 tatgaagcacggacactccttggataaggcgtgtctccgtgtcagacacgtctcgtgtccgacaccgacacatataattaca 13845547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 7928515 - 7928471
Alignment:
Q  291 cgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||||||||  |||||||||| | |||||||||||||    
T  7928515 cgtgtccgacaccgacacatataattacactgaattatgtgattt 7928471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 254 - 335
Target Start/End: Complemental strand, 10955056 - 10954973
Alignment:
Q  254 actcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||| ||||| |||||| ||||||| ||   |||||||||||||||||||||  | | |||||| | |||||||||||||    
T  10955056 actcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgacaccgacacttgtgattacactgaattatgtgattt 10954973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 18427018 - 18426970
Alignment:
Q  287 gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||| |||||||||||||| ||||||||||   |||||||||||||    
T  18427018 gtgtcgtatccgacaccgacatatataattacaccgaattatgtgattt 18426970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 24633391 - 24633439
Alignment:
Q  287 gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||| |||||||||  |||||||||||| ||||| |||||||    
T  24633391 gtgtcgtgtccaacaccgacacatataattacattgaattacgtgattt 24633439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 49505148 - 49505192
Alignment:
Q  291 cgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||| ||||  |||||||||| |||||||||||||||    
T  49505148 cgtgtccgacactgacacatataattacactaaattatgtgattt 49505192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 7378097 - 7378000
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagatg--tgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| |||||| |||  ||||| |||||| | ||||| ||||  ||||||||||||||||||||  |||||||||||| |||||||||||||    
T  7378097 tatgaagcacggacacttctcagattagccgtgtcccggtgtcggatgcatgtcgtgtccgacaccgacacatataattacattgaattatgtgattt 7378000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 17841530 - 17841627
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtc--agatgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||  | |  ||||||||||||||||| ||  | |||||||| |||||||||||||||    
T  17841530 tatgaagcacggacactcctcggattaggcgtgtctcagtgtcggacacatgtcgtgtccgacaccgtcacttgtaattacactaaattatgtgattt 17841627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 33001230 - 33001327
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||| |||||| | | ||||| ||| | || ||||||||   |||||||||||||||||||||  |||||||||||| |||||||||||||    
T  33001230 tatgaagcacaaacactctttggattaggcgtatttcggtgtcagacacgtgtcgtgtccgacaccgacacatataattacatttaattatgtgattt 33001327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 34595252 - 34595155
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| ||||||||||| |||||  ||||| | ||||||||   |||||||||||||||||||||  | |||||||| | |||||||||||||    
T  34595252 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgattt 34595155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 331
Target Start/End: Original strand, 32978842 - 32978933
Alignment:
Q  242 tgaagcacagacactcctcgaattagacgtgtctcagtgtcaga--tgtgtcgtgtccgacaccgacatctataattacattaaattatgtg 331  Q
    |||||||| ||||||||| | |||||||||||| | ||||| ||  ||||||||||||||||||||||  | |||||||| | |||||||||    
T  32978842 tgaagcacggacactccttggattagacgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacacttaattatgtg 32978933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 10339055 - 10339124
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcaga--tgtgtcgtgtccgacaccgaca 307  Q
    |||||||||| ||||||||||  ||||| |||||| ||||||| ||  ||||||||||||||||||||||    
T  10339055 tatgaagcacggacactcctccgattaggcgtgtcccagtgtcggacatgtgtcgtgtccgacaccgaca 10339124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 13360314 - 13360410
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcaga-tgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| ||||||| ||| ||||| |||||||||||||| ||   ||| ||||| |||||||| |  |||||||||| | |||||||||||||    
T  13360314 tatgaagcacggacactcttcggattaggcgtgtctcagtgtcggacattgttgtgtctgacaccgaaacatataattacactgaattatgtgattt 13360410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 240 - 345
Target Start/End: Complemental strand, 28152216 - 28152109
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgatttct 337  Q
    ||||||||||  |||||||||| ||||| | |||| | ||||| ||   |||||||||||||||||||||  | |||||||| | ||||||||||||| |    
T  28152216 tatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgattttt 28152117  T
Q  338 taaattat 345  Q
     |||||||    
T  28152116 caaattat 28152109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 332
Target Start/End: Complemental strand, 4878060 - 4877967
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcaga--tgtgtcgtgtccgacaccgacatctataattacattaaattatgtga 332  Q
    |||||||||| ||||||||||| ||||| |||||| | ||||| ||  ||||||||||||||||||||||  | |||||| | | ||||||||||    
T  4878060 tatgaagcacggacactcctcggattaggcgtgtc-ctgtgtcggacatgtgtcgtgtccgacaccgacacttgtaattatacttaattatgtga 4877967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 9629512 - 9629470
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtc 282  Q
    |||||||||  ||||||||||| ||||||||||||||||||||    
T  9629512 tatgaagcatggacactcctcggattagacgtgtctcagtgtc 9629470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 345
Target Start/End: Complemental strand, 9658998 - 9658889
Alignment:
Q  240 tatgaagcacagacactcctcg-aattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtga-ttt 335  Q
    |||||||||| ||||||||| | |||||| |||||  | ||||||||   ||||||||||  |||||||||  |||||||||| | |||||||||| |||    
T  9658998 tatgaagcacggacactccttggaattaggcgtgttccggtgtcagacacgtgtcgtgtctaacaccgacaaatataattacactgaattatgtgatttt 9658899  T
Q  336 cttaaattat 345  Q
    ||||||||||    
T  9658898 cttaaattat 9658889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 13364646 - 13364743
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcag--atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||||||||| ||| | ||||||||||   |||||||  |||| |||||||| |||||||||  ||| |||||| | |||||| ||||||    
T  13364646 tatgaagcacagacactcgtcggaatagacgtgtcctggtgtcagacatgtatcgtgtccaacaccgacacatatgattacactgaattatatgattt 13364743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 19040423 - 19040373
Alignment:
Q  285 atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||||||||| ||||  |||||||||| | |||||||||||||    
T  19040423 atgtgtcgtgtccgacacagacacatataattacactgaattatgtgattt 19040373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 24645599 - 24645530
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtc--agatgtgtcgtgtccgacaccgaca 307  Q
    |||||||||||||||||| ||| |||||||||||||  |||||  | | |||||||||| ||||||||||    
T  24645599 tatgaagcacagacactcttcggattagacgtgtcttggtgtcggacacgtgtcgtgtctgacaccgaca 24645530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 28715413 - 28715316
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtc--agatgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||  ||||| |||||||||| |||||| | |||||  | | |||||||||||||||||||||  | |||||||| | |||||||| ||||    
T  28715413 tatgaagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtcattt 28715316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 17327591 - 17327655
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcag--atgtgtcgtgtccgacac 302  Q
    |||||||||| ||||||||||| ||||| |||||| | |||||||  | ||||||||||||||||    
T  17327591 tatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacacgtgtcgtgtccgacac 17327655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 21206947 - 21206898
Alignment:
Q  292 gtgtccgacaccgacatctataattacattaaattatgtgatttcttaaa 341  Q
    |||||| |||||||||  |||||||||||||||||| ||| |||||||||    
T  21206947 gtgtccaacaccgacacatataattacattaaattaagtgttttcttaaa 21206898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 426508 - 426552
Alignment:
Q  291 cgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||||||||  | |||||||||| |||||||||||||    
T  426508 cgtgtccgacaccgacacttgtaattacatttaattatgtgattt 426552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 5732504 - 5732548
Alignment:
Q  291 cgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||||||||  |||||||||| |||| ||||||||||    
T  5732504 cgtgtccgacaccgacacatataattacactaaaatatgtgattt 5732548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 287 - 345
Target Start/End: Complemental strand, 30851669 - 30851612
Alignment:
Q  287 gtgtcgtgtccgacaccgacatctataattacattaaattatgtga-tttcttaaattat 345  Q
    |||||||||||||||||||||  |||||||||||| |||  ||||| |||||||||||||    
T  30851669 gtgtcgtgtccgacaccgacacatataattacattgaat--tgtgattttcttaaattat 30851612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 21576686 - 21576783
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcag--atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| ||||||||||| ||||| |||||| |||||||||  | ||||||||||||||| |||||  | |||||||| | |||||||||||||    
T  21576686 tatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacatcgacacttgtaattacactgaattatgtgattt 21576783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 28588662 - 28588712
Alignment:
Q  285 atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||||||||||||||| ||||||||||| | |||||||||||||    
T  28588662 atgtgtcgtgtccgacaccgacacctataattacactgaattatgtgattt 28588712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 42029870 - 42029773
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcaga--tgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||| |||| ||||||||||| || || |||||||  ||| ||||  |||||||||||||||||||| |  |||||||||||| |||||||||||||    
T  42029870 tatgatgcacggacactcctcggataaggcgtgtctacgtgacagacatgtgtcgtgtccgacaccgatacatataattacattgaattatgtgattt 42029773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 240 - 328
Target Start/End: Original strand, 32630676 - 32630766
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtc--agatgtgtcgtgtccgacaccgacatctataattacattaaattat 328  Q
    ||||||||| ||||||||||||||||||  |||||||| ||||  | | ||||||| |||||||| ||||  |||||||||||| ||||||    
T  32630676 tatgaagcatagacactcctcgaattaggtgtgtctcaatgtcggacacgtgtcgtatccgacactgacacatataattacattgaattat 32630766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 43564949 - 43564902
Alignment:
Q  288 tgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||||    
T  43564949 tgtcgtgtccgacaccgacacttataattacactaaattatgtgattt 43564902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 23012396 - 23012446
Alignment:
Q  285 atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||||| |||||||||  ||||||||||||||||||| ||||||    
T  23012396 atgtgtcgtgtccaacaccgacacatataattacattaaattatatgattt 23012446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 39698670 - 39698601
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgaca 307  Q
    |||||||||| ||||||||||| ||||| |||||||| ||||| |||   ||||||||||||||||||||    
T  39698670 tatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatacatgtcgtgtccgacaccgaca 39698601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 9929719 - 9929685
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtc 274  Q
    |||||||||||||||||||||||||||| ||||||    
T  9929719 tatgaagcacagacactcctcgaattagtcgtgtc 9929685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 30098381 - 30098347
Alignment:
Q  301 accgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||||||||||||| |||||||||||||    
T  30098381 accgacatctataattacattgaattatgtgattt 30098347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 30502376 - 30502426
Alignment:
Q  285 atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||||||||||||||  |||||||||| | ||||| |||||||    
T  30502376 atgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattt 30502426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 30542719 - 30542769
Alignment:
Q  285 atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||||||||||||||  |||||||||| | ||||| |||||||    
T  30542719 atgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattt 30542769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 16203784 - 16203833
Alignment:
Q  286 tgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||| |||||||||||||||  |||||||||| ||||||||| |||||    
T  16203784 tgtgtcttgtccgacaccgacacatataattacactaaattatgagattt 16203833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 18421779 - 18421812
Alignment:
Q  241 atgaagcacagacactcctcgaattagacgtgtc 274  Q
    ||||||||||||||||||||| ||||||||||||    
T  18421779 atgaagcacagacactcctcggattagacgtgtc 18421812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 15884057 - 15884009
Alignment:
Q  287 gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||||||||||||  | |||||||| | |||||||||||||    
T  15884057 gtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgattt 15884009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 241 - 335
Target Start/End: Original strand, 2438661 - 2438757
Alignment:
Q  241 atgaagcacagacactcctcgaattagacgtgtctcagtgtcaga--tgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||| ||||||||||| ||||| |||||| | ||||| ||  ||||||||||||||||||||||  | |||||||| | |||||||||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgattt 2438757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 285 - 336
Target Start/End: Complemental strand, 5367263 - 5367212
Alignment:
Q  285 atgtgtcgtgtccgacaccgacatctataattacattaaattatgtgatttc 336  Q
    |||||||||||||||||||||||  |||||||||| | ||||||||||||||    
T  5367263 atgtgtcgtgtccgacaccgacacatataattacactgaattatgtgatttc 5367212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 20242668 - 20242765
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||||||||| ||| || || ||||||   ||||||||   |||| ||||||||||||||||  |||||||||| | |||||||||||||    
T  20242668 tatgaagcacagacactcttcggataaggcgtgtcctcgtgtcagacacgtgttgtgtccgacaccgacacatataattacactgaattatgtgattt 20242765  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 34784912 - 34784981
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcag--atgtgtcgtgtccgacaccgaca 307  Q
    ||||||||||||||||||||||||| || |||||| | |||||||  | ||||||||||||| |||||||    
T  34784912 tatgaagcacagacactcctcgaataaggcgtgtccccgtgtcagacaggtgtcgtgtccgataccgaca 34784981  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 18255974 - 18256018
Alignment:
Q  291 cgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||||||||  | ||||||||||||||||||||||||    
T  18255974 cgtgtccgacaccgacacttctaattacattaaattatgtgattt 18256018  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 240 - 333
Target Start/End: Complemental strand, 28596587 - 28596492
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgat 333  Q
    |||||||||| ||||||||||| |||||  |||||  |||||| ||   |||||||||||||||||||||  |||||||||| | | |||||||||    
T  28596587 tatgaagcacggacactcctcggattaggagtgtccgagtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgacttatgtgat 28596492  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 31018655 - 31018611
Alignment:
Q  291 cgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||||    
T  31018655 cgtgtccgacaccgacacctataattacactaaatcatgtgattt 31018611  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 5040802 - 5040755
Alignment:
Q  288 tgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||||||||||||  | |||||||||| |||||||||||||    
T  5040802 tgtcgtgtccgacaccgacacttgtaattacattgaattatgtgattt 5040755  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 308
Target Start/End: Complemental strand, 26769640 - 26769570
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtc--agatgtgtcgtgtccgacaccgacat 308  Q
    |||||||||| ||||||||||| ||||| |||||| |||||||  | | ||||||||||||| ||||||||    
T  26769640 tatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacat 26769570  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 18840954 - 18841051
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcaga--tgtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| ||||||||||| |||||  ||||| | ||||| ||  ||||||||||| ||||||||||  | |||||||| | |||||||| ||||    
T  18840954 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaattacacttaattatgtaattt 18841051  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 28341869 - 28341907
Alignment:
Q  297 cgacaccgacatctataattacattaaattatgtgattt 335  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  28341869 cgacaccgacatctataattacattgaattatgtcattt 28341907  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 11223794 - 11223863
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat-gtgtcgtgtccgacaccgacat 308  Q
    |||||||||| ||||||||||  ||||| |||||| | ||||||||  ||||||||||||||||| ||||    
T  11223794 tatgaagcacggacactcctcagattaggcgtgtcccggtgtcagacagtgtcgtgtccgacacctacat 11223863  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 20922922 - 20922966
Alignment:
Q  291 cgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||| ||||  |||||||||| |||||||||||||||    
T  20922922 cgtgtccgacacagacacatataattacactaaattatgtgattt 20922966  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 345
Target Start/End: Complemental strand, 31026757 - 31026705
Alignment:
Q  294 gtccgacaccgacatctataattacattaaattatgtga-tttcttaaattat 345  Q
    ||||||||||||||| ||| |||||||| |||||||| | |||||||||||||    
T  31026757 gtccgacaccgacatatatgattacattgaattatgtcattttcttaaattat 31026705  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 39026875 - 39026839
Alignment:
Q  299 acaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  39026875 acaccgacatttataattacattaaaatatgtgattt 39026839  T

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Target: scaffold0512 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 4977 - 5046
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtc--agatgtgtcgtgtccgacaccgaca 307  Q
    |||||||||||||||||||||| ||||| | ||||||| ||||  | | |||||||||||||||||||||    
T  4977 tatgaagcacagacactcctcggattaggcatgtctcaatgtcggacacgtgtcgtgtccgacaccgaca 5046  T

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Target: scaffold0053 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 8916 - 8819
Alignment:
Q  240 tatgaagcacagacactcctcgaattagacgtgtctcagtgtcagat--gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||| || |||||||  ||||| |||||||| ||||| ||   |||||||||||||||||||||  | |||||||| ||||| || ||||||    
T  8916 tatgaagcacggagactcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaataatatgattt 8819  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 70347 - 70299
Alignment:
Q  287 gtgtcgtgtccgacaccgacatctataattacattaaattatgtgattt 335  Q
    |||||||||||||||||||||  |||||||||| | |||||||| ||||    
T  70347 gtgtcgtgtccgacaccgacacttataattacactgaattatgttattt 70299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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