View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2755_low_33 (Length: 308)
Name: NF2755_low_33
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2755_low_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 7118085 - 7118376
Alignment:
| Q |
1 |
attgttggtgtggatatagccgtaccaagccataggataggttcgtccatagatgaaatgatagctattaaatatgnnnnnnnaagtaaagtaaacttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
7118085 |
attgttggtgtggatatagccgtaccaagccataggataggttcgtccatagatgaaatgatagctattaaatatgttttttta-gtaaagtaaacttat |
7118183 |
T |
|
| Q |
101 |
aatttataagttagtttgtgtgtcttgccaaagaaactcaaacccaattttagttgaaaacaataaaacatgacaaaattgattctagacctcaaaaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7118184 |
aatttataagttagtttgtgtgtcttgccaaagaaactcaaacccaattttagttgaaaacaataaaacatgacaaaattgattctagacctcaaaaatc |
7118283 |
T |
|
| Q |
201 |
aattttgtcttctcaaaaattaaaaaccaaacacaaacgtagtgattctagccgttcaatattaaatcaacaatgaagatccttttaattttt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7118284 |
aattttgtcttctcaaaaattaaaaaccaaacacaaacgtagtgattctagccgttcaatattaaatcaacaatgaagatccttttaactttt |
7118376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University