View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2755_low_36 (Length: 291)
Name: NF2755_low_36
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2755_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 39643896 - 39644165
Alignment:
| Q |
20 |
gaggagttcgcagtacagaggagtcacgttttatcggagaactggaagatgggaatcacatatctggttcgtgcactttgtgttcattttactattttag |
119 |
Q |
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| T |
39643896 |
gaggagttcgcagtacagaggagtcacgttttatcggagaactggaagatgggaatcacatatctggttcgtgcacttcgtgttcattttactattttag |
39643995 |
T |
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| Q |
120 |
cctttctcgtannnnnnnactcgcaccggatcatataaaatgtctctgcattttatcatc---------------gttatggtggaaagtgattataatt |
204 |
Q |
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| T |
39643996 |
cctttctcgtatttttttactcgcaccggatcatataaaatgtctctgcattttatcatcttagttgtacttactcttatggtggaaagtggttataatt |
39644095 |
T |
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| Q |
205 |
tttgtgagaattttgaatttggatagttgaataatatctaacttgttttatttggtggttgtattttgta |
274 |
Q |
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| T |
39644096 |
tttgtgagaattttgaatttggatagttgaataatatctaacttgttttatttggtggttgtgttttgta |
39644165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 22617293 - 22617226
Alignment:
| Q |
24 |
agttcgcagtacagaggagtcacgttttatcggagaactggaagatgggaatcacatatctggttcgt |
91 |
Q |
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|||||||| |||||||| || ||||||||||| || ||||| ||||||||||| |||||||||||||| |
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| T |
22617293 |
agttcgcaatacagaggtgttacgttttatcgcaggactggtagatgggaatcgcatatctggttcgt |
22617226 |
T |
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