View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2755_low_41 (Length: 249)
Name: NF2755_low_41
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2755_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 231
Target Start/End: Complemental strand, 2509602 - 2509384
Alignment:
| Q |
13 |
atgaaacaagatcacaagtttttataagataacaaacaaaaaggaataaacaaatacaaatgatgaaaaggtagaaagcaacacctgaagaaagaaggga |
112 |
Q |
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| T |
2509602 |
atgaaacaagatcacaagtttttataagataacaaacaaaaaggaataaacaaataaaaatgatgaaaaggtagaaagcaacacctgaagaaagaaggga |
2509503 |
T |
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| Q |
113 |
atggaaggactaaaagaaggtaatagtcatacgaaaataattttcagagaatgaaaggaacattaatttaactgttacttactatctcttgcatgtaaat |
212 |
Q |
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| T |
2509502 |
atggaaggactaaaagaaggtaatagtcatacgaaaataattttcagagaatgaaaggaacattaatttaactgttacttactatctcttgcatgtaaat |
2509403 |
T |
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| Q |
213 |
ttggaagtgagcatgttta |
231 |
Q |
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| T |
2509402 |
ttcgaagtgagcatgttta |
2509384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 2512770 - 2512637
Alignment:
| Q |
98 |
tgaagaaagaagggaatggaaggactaaaagaaggtaatagtcatacgaaaataattttcagagaatgaaaggaacattaatttaactgttacttactat |
197 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
2512770 |
tgaagagagaagggaatggaaggactaaaagaaggtaatagtcatacgaaaataatttttagagaatgaaaggaacatgaatttaactgttacttactat |
2512671 |
T |
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| Q |
198 |
ctcttgcatgtaaatttggaagtgagcatgttta |
231 |
Q |
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| T |
2512670 |
ctcttgcatgtaaatttggaagtgagcatgttta |
2512637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 2517006 - 2516873
Alignment:
| Q |
98 |
tgaagaaagaagggaatggaaggactaaaagaaggtaatagtcatacgaaaataattttcagagaatgaaaggaacattaatttaactgttacttactat |
197 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| || ||| ||||||| |
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| T |
2517006 |
tgaagaaagaagtgaaaggaaggactaaaagaaggtaatattcatacgaaaataatttatagagaatgaaaggaacatgaatttgaccgtttgttactat |
2516907 |
T |
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| Q |
198 |
ctcttgcatgtaaatttggaagtgagcatgttta |
231 |
Q |
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| T |
2516906 |
ccattgcatgcaaatgttggagtgagcatgttta |
2516873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 2512861 - 2512794
Alignment:
| Q |
13 |
atgaaacaagatcacaagtttttataagataacaaacaaaaaggaataaacaaatacaaatgatgaaa |
80 |
Q |
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|||||| |||||||||||||||| ||||||||||| ||| ||| ||||||||| ||||||||||| |
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| T |
2512861 |
atgaaaaaagatcacaagtttttgaaagataacaaaatgaaaagaaaaaacaaataaaaatgatgaaa |
2512794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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