View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2755_low_44 (Length: 225)

Name: NF2755_low_44
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2755_low_44
NF2755_low_44
[»] chr3 (14 HSPs)
chr3 (1-208)||(7750129-7750336)
chr3 (1-198)||(6591058-6591255)
chr3 (84-196)||(8589917-8590029)
chr3 (84-193)||(6736178-6736287)
chr3 (1-113)||(6721881-6721993)
chr3 (84-193)||(6554170-6554279)
chr3 (84-193)||(6448514-6448623)
chr3 (84-193)||(6479714-6479823)
chr3 (84-193)||(6519894-6520003)
chr3 (84-193)||(6947457-6947566)
chr3 (84-196)||(8454842-8454954)
chr3 (1-99)||(13270357-13270455)
chr3 (1-113)||(6882634-6882746)
chr3 (21-75)||(6917251-6917305)
[»] scaffold0425 (1 HSPs)
scaffold0425 (84-193)||(7209-7318)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 7750129 - 7750336
Alignment:
Q  1 tccaagagtcactctcattcaattgatttaaacgaagtagccgggtggatgccatgattgatgctacttcattgtgaggcgtcgtcacgataagcttact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7750129 tccaagagtcactctcattcaattgatttaaacgaagtagccgggtggatgccatgattgatgctacttcattgtgaggcgtcctcacgataagcttact 7750228  T
Q  101 tccagaggatccattgctaaacagaagtagtagcttcttccaacattccacattctcgttccagatattgtctaaaacaagcaagtacttcttgccagct 200  Q
    |||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7750229 tccagaggatccattgctaaatggaagtagtagcttcttcctacattccacattctcgttccagatattgtctaaaacaagcaagtacttcttgccagct 7750328  T
Q  201 agtctctg 208  Q
    ||||||||    
T  7750329 agtctctg 7750336  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 6591255 - 6591058
Alignment:
Q  1 tccaagagtcactctcattcaattgatttaaacgaagtagccgggtggatgccatgattgatgctacttcattgtgaggcgtcgtcacgataagcttact 100  Q
    |||||||||||||||| | |||||||||||||  || |||| |||||||| ||||||||||||||||||| |||| | |||| ||||| || | ||||||    
T  6591255 tccaagagtcactctcctccaattgatttaaatcaactagctgggtggatcccatgattgatgctacttccttgtcatgcgttgtcaccatcatcttact 6591156  T
Q  101 tccagaggatccattgctaaacagaagtagtagcttcttccaacattccacattctcgttccagatattgtctaaaacaagcaagtacttcttgccag 198  Q
    |||||| ||||||| ||||||| ||||||||||| ||| |||||||||| | ||  || | |||||||||||||||||||||||||| ||||||||||    
T  6591155 tccagaagatccatggctaaacggaagtagtagcatctcccaacattccgcttttccgctacagatattgtctaaaacaagcaagtatttcttgccag 6591058  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 8589917 - 8590029
Alignment:
Q  84 gtcacgataagcttacttccagaggatccattgctaaacagaagtagtagcttcttccaacattccacattctcgttccagatattgtctaaaacaagca 183  Q
    ||||||| || ||||||||||||  |||||| | ||||  ||||||||| || || |||||||||  ||||| |||||||||||| ||||||||||||||    
T  8589917 gtcacgacaatcttacttccagaaaatccatggttaaagggaagtagtaactgctcccaacattctgcattcccgttccagatatcgtctaaaacaagca 8590016  T
Q  184 agtacttcttgcc 196  Q
    |||| ||||||||    
T  8590017 agtatttcttgcc 8590029  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 193
Target Start/End: Original strand, 6736178 - 6736287
Alignment:
Q  84 gtcacgataagcttacttccagaggatccattgctaaacagaagtagtagcttcttccaacattccacattctcgttccagatattgtctaaaacaagca 183  Q
    ||||||||||  ||||||||||| ||||||| | ||||| |||||||||||| || |||| |||| ||| || | ||||||||||  |||||||||||||    
T  6736178 gtcacgataattttacttccagaagatccatggttaaacggaagtagtagctgctcccaatattctacactcccattccagatatcatctaaaacaagca 6736277  T
Q  184 agtacttctt 193  Q
    |||| |||||    
T  6736278 agtatttctt 6736287  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 6721993 - 6721881
Alignment:
Q  1 tccaagagtcactctcattcaattgatttaaacgaagtagccgggtggatgccatgattgatgctacttcattgtgaggcgtcgtcacgataagcttact 100  Q
    ||||||||||||| || | |||||||| |||| |||||||||||||||||  |||||||||||||||||| ||||   | || |||||||| | ||||||    
T  6721993 tccaagagtcactttcctccaattgatataaatgaagtagccgggtggatctcatgattgatgctacttccttgtcccgtgttgtcacgatcatcttact 6721894  T
Q  101 tccagaggatcca 113  Q
    ||| || ||||||    
T  6721893 tcctgaagatcca 6721881  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 193
Target Start/End: Complemental strand, 6554279 - 6554170
Alignment:
Q  84 gtcacgataagcttacttccagaggatccattgctaaacagaagtagtagcttcttccaacattccacattctcgttccagatattgtctaaaacaagca 183  Q
    |||||||||| | |||||||||| ||||||| | ||||| |||||||||||| || |||| |||| ||| || | ||||| ||||  |||||||||||||    
T  6554279 gtcacgataatcatacttccagaagatccatggttaaacggaagtagtagctgctcccaatattctacactcccattccatatatcatctaaaacaagca 6554180  T
Q  184 agtacttctt 193  Q
    |||| |||||    
T  6554179 agtatttctt 6554170  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 193
Target Start/End: Complemental strand, 6448623 - 6448514
Alignment:
Q  84 gtcacgataagcttacttccagaggatccattgctaaacagaagtagtagcttcttccaacattccacattctcgttccagatattgtctaaaacaagca 183  Q
    ||||| |||| |||||||||||| ||||||| | ||||| |||| |||| || || ||||| |||  ||||| |||||||||| | |||||||||||| |    
T  6448623 gtcacaataatcttacttccagaagatccatggttaaacggaagcagtacctgctcccaacgttctgcattcccgttccagatgtcgtctaaaacaagaa 6448524  T
Q  184 agtacttctt 193  Q
    |||| |||||    
T  6448523 agtatttctt 6448514  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 193
Target Start/End: Complemental strand, 6479823 - 6479714
Alignment:
Q  84 gtcacgataagcttacttccagaggatccattgctaaacagaagtagtagcttcttccaacattccacattctcgttccagatattgtctaaaacaagca 183  Q
    |||||||||| |||||||||| | ||||||| | ||||  ||||||||| || || |||| | || |||||| | ||||||||||  |||||||||||||    
T  6479823 gtcacgataatcttacttccaaaagatccatggttaaatggaagtagtaactgctcccaatactctacattcccattccagatatcatctaaaacaagca 6479724  T
Q  184 agtacttctt 193  Q
    |||| |||||    
T  6479723 agtatttctt 6479714  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 193
Target Start/End: Complemental strand, 6520003 - 6519894
Alignment:
Q  84 gtcacgataagcttacttccagaggatccattgctaaacagaagtagtagcttcttccaacattccacattctcgttccagatattgtctaaaacaagca 183  Q
    |||||||||| |||||||||||| ||||||| | ||| | ||||||||| ||| | |||  |||| || ||| | ||||||||||  |||||||||||||    
T  6520003 gtcacgataatcttacttccagaagatccatggttaagcggaagtagtaacttatcccagtattctaccttcccattccagatatcatctaaaacaagca 6519904  T
Q  184 agtacttctt 193  Q
    |||| |||||    
T  6519903 agtatttctt 6519894  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 193
Target Start/End: Original strand, 6947457 - 6947566
Alignment:
Q  84 gtcacgataagcttacttccagaggatccattgctaaacagaagtagtagcttcttccaacattccacattctcgttccagatattgtctaaaacaagca 183  Q
    |||||||||| |||||||||||| ||||||| | ||||  |||| |||| |  || |||||||||  ||| | ||||||||||||  |||||||||||||    
T  6947457 gtcacgataatcttacttccagaagatccatggttaaagggaagaagtaacagctcccaacattctgcatccccgttccagatatcatctaaaacaagca 6947556  T
Q  184 agtacttctt 193  Q
    |||| |||||    
T  6947557 agtatttctt 6947566  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 8454842 - 8454954
Alignment:
Q  84 gtcacgataagcttacttccagaggatccattgctaaacagaagtagtagcttcttccaacattccacattctcgttccagatattgtctaaaacaagca 183  Q
    ||||||| || |||||||||| | ||||||| | ||||  ||||||||| |  || ||||| |||| ||| | |||||||||||| ||||||||||||||    
T  8454842 gtcacgacaatcttacttccaaaagatccatggttaaagggaagtagtaacaactcccaacgttccgcatccccgttccagatatcgtctaaaacaagca 8454941  T
Q  184 agtacttcttgcc 196  Q
    | || ||||||||    
T  8454942 aatatttcttgcc 8454954  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 13270455 - 13270357
Alignment:
Q  1 tccaagagtcactctcattcaattgatttaaacgaagtagccgggtggatgccatgattgatgctacttcattgtgaggcgtcgtcacgataagcttac 99  Q
    |||||||||||||||| | ||||||  ||||| ||| || |||| |||||  ||||| ||||||||||||||| | | | ||||||||||||| |||||    
T  13270455 tccaagagtcactctcctccaattgccttaaatgaattatccggttggatctcatgactgatgctacttcattatcatgtgtcgtcacgataatcttac 13270357  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 6882634 - 6882746
Alignment:
Q  1 tccaagagtcactctcattcaattgatttaaacgaagtagccgggtggatgccatgattgatgctacttcattgtgaggcgtcgtcacgataagcttact 100  Q
    ||||||| |||||||| | |||||| |||||  | | |||||||||||||  |||||||||||||||||| |||| | | || ||||| || | ||||||    
T  6882634 tccaagaatcactctcctccaattgctttaagtgtattagccgggtggatctcatgattgatgctacttccttgtcatgtgttgtcacaatcatcttact 6882733  T
Q  101 tccagaggatcca 113  Q
    ||| || ||||||    
T  6882734 tcctgaagatcca 6882746  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 6917251 - 6917305
Alignment:
Q  21 aattgatttaaacgaagtagccgggtggatgccatgattgatgctacttcattgt 75  Q
    ||||| ||||||  ||||||||||||||||  |||||||||||||||||| ||||    
T  6917251 aattgctttaaatcaagtagccgggtggatctcatgattgatgctacttccttgt 6917305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 193
Target Start/End: Complemental strand, 7318 - 7209
Alignment:
Q  84 gtcacgataagcttacttccagaggatccattgctaaacagaagtagtagcttcttccaacattccacattctcgttccagatattgtctaaaacaagca 183  Q
    ||||||||||  ||||||||||| ||||||| | ||||| |||||||||||| || |||| |||| ||| || | ||||| ||||  |||||||||||||    
T  7318 gtcacgataattttacttccagaagatccatggttaaacggaagtagtagctgctcccaatattctacactcccattccatatatcatctaaaacaagca 7219  T
Q  184 agtacttctt 193  Q
    |||| |||||    
T  7218 agtatttctt 7209  T

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