View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2755_low_5 (Length: 625)
Name: NF2755_low_5
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2755_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Original strand, 379244 - 379848
Alignment:
| Q |
1 |
taatgtgttgtggtgtttcatttcgttcgaactcacgaccacttgatacatagagcttttagtttccattgcgacacatatgaaaagcctgattaagtat |
100 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
379244 |
taatgtgttgtggtggttcattccgttcgaactcacgaccacttgatacatagcgcttttagtttccattgcgacacatatgaaaagcctcattaagtat |
379343 |
T |
|
| Q |
101 |
gattgatacaatattaataccatatttagggggagccatggctaccatggactcctaagaagatctgcccctgatctggaccaccttagttgaatgagct |
200 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
379344 |
gcatgatacaatattaataccatatttggggggagccatggttaccatggactcctaagaagatttgcccctgatctggaccaccttagttgaatgagct |
379443 |
T |
|
| Q |
201 |
tgaaccccaccagcaccatgtggcggcggaggaggcgacggatgtcatgatgatgagtcgttgtggtctaggaggaggagccacaaccaatggatcaata |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
379444 |
tgaaccccaccagcaccatgtggaggcggaggaggcgacggatgtcatgatgatgagtcgttgtggtctaggaggaggagccacaaccaatggatcaata |
379543 |
T |
|
| Q |
301 |
ttgtggtggtccgtatgatgtgtttgtgctcacctaccatcatcaagagattaacacattgccatattcaacacttgcaattcaaatctcatatttcaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
379544 |
ttgtggtggtccgtatgatgtgtttgtgctcacctaccatcatcaagagattaacacattgccatattcaacacttgcaattcgaatctcatatttcaat |
379643 |
T |
|
| Q |
401 |
atattcatcttagaatgacattttagccattagattaaacaattnnnnnnntgttcacttagtggaaccttattaaaatagtggttcatcaaactgaggt |
500 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
379644 |
atattcatcttagaatgaaattttagccattagattaaacaattaaaaaaatgttcacttagtggaaccttattaaaatagcgtttcatcaaactgaggt |
379743 |
T |
|
| Q |
501 |
gtgtcaacaatttggctctttttcaatatgacttggtatagctcacagttcaacttggtttttcataaaccgtgaacatacctaattgcaggttatcact |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
379744 |
gtgtcaacaatttggctctttttcaatatgacttggtatagctcacagttcaacttggtttttcataaaccgtgaacatacctaattgcaggttatcact |
379843 |
T |
|
| Q |
601 |
gcact |
605 |
Q |
| |
|
||||| |
|
|
| T |
379844 |
gcact |
379848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 10574315 - 10574361
Alignment:
| Q |
127 |
tagggggagccatggctaccatggactcctaagaagatctgcccctg |
173 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
10574315 |
tagggggagccatggctaccatgggctcccaagaagatccgcccctg |
10574361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 42148764 - 42148821
Alignment:
| Q |
110 |
aatattaataccatatttagggggagccatggctaccatggactcctaagaagatctg |
167 |
Q |
| |
|
||||| ||||| | |||| |||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
42148764 |
aatataaatacgaaatttggggggagccatggctaccatgggctcttaagaagatctg |
42148821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University