View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2755_low_6 (Length: 609)
Name: NF2755_low_6
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2755_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 21 - 594
Target Start/End: Complemental strand, 26218440 - 26217852
Alignment:
| Q |
21 |
ctatgaccatcacatacaatgaatttattactccttatacttcgccatacatcacagtagtttccaatctgtttggcaatatggcattactgaaagtgga |
120 |
Q |
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| T |
26218440 |
ctatgaccatcacatacaatgaatttattactccttatacttcgccatacatcacagtagtttccaatctgtttggcaatatggcattactgaaagtgga |
26218341 |
T |
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| Q |
121 |
tatgcacttaaatccgaaaccacattcattcttgtgtgtatctaaactatcccaagatctatttgacctcac----------------caaaataaattc |
204 |
Q |
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| T |
26218340 |
tatgcacttaaatccgaaaccacattcattcttgtgtgtatctaaactatcccaagatctatttgacctcacatctatttgacctcaccaaaataaattc |
26218241 |
T |
|
| Q |
205 |
atcatttttgtcaattttgacacaaagattagttggtagtaataatatgctcaacacattggacgagatcgaatgcaggacatatttaattaagatttct |
304 |
Q |
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| T |
26218240 |
atcatttttgtcaattttgacacaaagattagttggtagtaataatatgctcaacacattggacgagatcgaatgcaggacatatttaattaagatttct |
26218141 |
T |
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| Q |
305 |
ctacctacttgagaaagacattgattacttcatgagttgatcttttttcaaattctatcttagatgaatttgaaggtgnnnnnnnnctcgaattaccagt |
404 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
26218140 |
ctacctacttgagaaagacatcgattacttcatgagtt-atcttttttcaaattctatcttagatgaatttgaaggtgttttttttctcgacttaccagt |
26218042 |
T |
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| Q |
405 |
aataggagaccaagatattttccactacctaaaacttgtctcatcccaagaatgtaagaattagaatctttcatcggtgatgtgatattcctactacgct |
504 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
26218041 |
aataggagacccagatattttccactacctaaaacttgtctcaccccaagaatgtaagaattagaatctttcaccggtgatgtgatattcctactatgct |
26217942 |
T |
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| Q |
505 |
atatttctaacttttgaaaattgattgactggcctgacatgtcttcttaagttttaaaaatattttgcatcactcaagcttcaccctatg |
594 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26217941 |
atatttttaacttttgaaaattgattgactggcctgacatgtcttcttaagttttaaaaatattttgcatcactcaagcttcaccctatg |
26217852 |
T |
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