View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2755_low_8 (Length: 595)
Name: NF2755_low_8
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2755_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Original strand, 5037651 - 5038225
Alignment:
| Q |
1 |
accagatcaatttatgtttatatttttgcacatttgttttaatttgcttcacgacaaattgatttttcaaaaagccataatgttgcagcttatatttaga |
100 |
Q |
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| T |
5037651 |
accagatcaatttatgtttatatttttgcacatttgttttaatttgcttcacgacaaattgatttttcaaaaagccataatgttgcagcttatatttaga |
5037750 |
T |
|
| Q |
101 |
aataaaagatacctgcacatatcaatcagtcgtgaaatcaattgacattactagacctttttgtaatgaatactcaaaaacacatgtatggtatggtaca |
200 |
Q |
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| T |
5037751 |
gataaaagatacctgcacatatcaatcagtcgtgaaatcaattgacattactagacctttttgtaacgaatactcaaaaacacatgtatggtatggtaca |
5037850 |
T |
|
| Q |
201 |
aataattttgatctataatggacaaactaccatttatatattcaaaataacaaccatttattatatacaaaaatgattaagcttaattggtcaataaatt |
300 |
Q |
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| T |
5037851 |
aataattttgatctataatggaccaactaccatttatatattcaaaataacaaccatttattatatacaaaaatgattaagcttaattggtcaatgaatt |
5037950 |
T |
|
| Q |
301 |
tcagttaaagacaaaccaacgaagtactatggttgaaacgaccattagttaaactttgaattatcatggattcctttctctattgaaacaaaaagtaata |
400 |
Q |
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| T |
5037951 |
t------aagacaaaccaatgaagtactatggttgaaacgaatattagttaaactttgaattatcatggattcctttctctattgaaacaaaaagtaata |
5038044 |
T |
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| Q |
401 |
ctaatttttctagatactaaattaaatctctaatcacatacttaaaagtcccaccatttatcaattgtatcacataaaaccggtgaatagaaatcaattt |
500 |
Q |
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| T |
5038045 |
ctaatttttctagatgctaaattaaatctctaatcacatgctt-aaagtcccaccatttatcaattgtatcacataaaaccggtgaatagaaatcaattt |
5038143 |
T |
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| Q |
501 |
aaacaatactatactattgcgatgcatattgtgattgctgcgatgtgaatttattttgaatagcataaaatattagtataat |
582 |
Q |
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| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
5038144 |
agacaatactatactattgcgatgcatattgtgattgctgcggtgtgaatttattttgaatagcataaaatattaatataat |
5038225 |
T |
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