View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2755_low_9 (Length: 515)
Name: NF2755_low_9
Description: NF2755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2755_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 49979663 - 49979374
Alignment:
| Q |
17 |
agaaagggggtctgtgtttgtattatgtatggttttcgaactgataaggtttctagatatgcgttaagaagaaatttgattgatagtagaggcatgattg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49979663 |
agaaagggggtctgtgtttgtattatgtatggttttcgaactgataaggtttctagatatgcgttaagaagaaatttgattgatagtagaggcatgattg |
49979564 |
T |
|
| Q |
117 |
attgtttgaatattctatgtatgag--tatgccggaaacactcagctggagtattcgacttttgttgtgatattaccttaattgtgcaagcatagtgtga |
214 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49979563 |
attgtttgaatattctatgtatgagagtataccggaaacactcagctggagtattcgacttttgttgtgatattaccttaattgtgcaagcatagtgtga |
49979464 |
T |
|
| Q |
215 |
cactgacatgatgagcatatcaagaaactagaatattctaattttggtttgactagagagagtgagaggtagatttttggatttttagtt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49979463 |
cactgacatgatgagcatatcaagaaactagaatattctaattttggtttgactagagagagtgagaggtagatttttggatttttagtt |
49979374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 388 - 515
Target Start/End: Complemental strand, 49979290 - 49979164
Alignment:
| Q |
388 |
gaagtgacacaaactttcagttcatatccaacagcttgtttgttgttgtaccgaaccaacatataaaagacattcccacagctagaatccaaagtagctg |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
49979290 |
gaagtgacacaaactttcagttcatatccaacagcttgtttgttgttgtaccgaaccaacatataaaagacatt-ccacagctagaatccaaagtagctg |
49979192 |
T |
|
| Q |
488 |
aggttgtgaatgatctcaaaagctgcag |
515 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
49979191 |
aggttgtgaatgagctcaaaagctgcag |
49979164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 461 - 509
Target Start/End: Original strand, 49951738 - 49951786
Alignment:
| Q |
461 |
tcccacagctagaatccaaagtagctgaggttgtgaatgatctcaaaag |
509 |
Q |
| |
|
|||||||||| || |||||||||||||| |||||||||||||||||| |
|
|
| T |
49951738 |
tcccacagctccaagccaaagtagctgagcgtgtgaatgatctcaaaag |
49951786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University