View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2756_low_5 (Length: 218)

Name: NF2756_low_5
Description: NF2756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2756_low_5
NF2756_low_5
[»] chr5 (13 HSPs)
chr5 (41-91)||(895744-895794)
chr5 (122-164)||(35814448-35814490)
chr5 (124-180)||(6865794-6865850)
chr5 (126-178)||(12878755-12878807)
chr5 (123-166)||(41383386-41383429)
chr5 (126-180)||(372727-372781)
chr5 (126-180)||(4434481-4434535)
chr5 (126-180)||(14206399-14206453)
chr5 (127-165)||(27440479-27440517)
chr5 (127-165)||(38010872-38010910)
chr5 (130-179)||(4098626-4098675)
chr5 (126-166)||(6964402-6964442)
chr5 (124-180)||(20720022-20720078)
[»] chr1 (24 HSPs)
chr1 (127-180)||(16836122-16836175)
chr1 (126-180)||(50797790-50797844)
chr1 (126-180)||(27687526-27687580)
chr1 (126-180)||(40596061-40596115)
chr1 (127-180)||(41507201-41507254)
chr1 (126-174)||(1690445-1690493)
chr1 (125-157)||(34941961-34941993)
chr1 (125-165)||(51168801-51168841)
chr1 (127-190)||(18336158-18336221)
chr1 (126-165)||(27352629-27352668)
chr1 (126-180)||(611642-611696)
chr1 (126-164)||(29489393-29489431)
chr1 (128-166)||(41029028-41029066)
chr1 (126-180)||(44517968-44518022)
chr1 (126-180)||(49453490-49453544)
chr1 (128-166)||(52714979-52715017)
chr1 (124-165)||(19442503-19442544)
chr1 (124-165)||(26101391-26101432)
chr1 (127-180)||(40139126-40139179)
chr1 (124-165)||(43457852-43457893)
chr1 (125-165)||(26501293-26501333)
chr1 (125-165)||(35846910-35846950)
chr1 (126-174)||(43612093-43612141)
chr1 (128-180)||(51571416-51571468)
[»] chr3 (23 HSPs)
chr3 (126-180)||(43169760-43169814)
chr3 (124-180)||(47683798-47683854)
chr3 (126-180)||(46952948-46953002)
chr3 (126-180)||(52431207-52431261)
chr3 (126-174)||(1765403-1765451)
chr3 (126-165)||(27198193-27198232)
chr3 (126-165)||(47774008-47774047)
chr3 (126-165)||(53473609-53473648)
chr3 (128-170)||(39928980-39929022)
chr3 (126-180)||(49361842-49361896)
chr3 (127-180)||(9753230-9753283)
chr3 (128-165)||(40419675-40419712)
chr3 (124-165)||(44910694-44910735)
chr3 (125-174)||(50146486-50146535)
chr3 (126-163)||(55344331-55344368)
chr3 (124-180)||(11056929-11056985)
chr3 (124-164)||(11225162-11225202)
chr3 (131-163)||(31366885-31366917)
chr3 (125-165)||(34021496-34021536)
chr3 (126-166)||(35074122-35074162)
chr3 (124-180)||(38957519-38957574)
chr3 (126-166)||(47849671-47849711)
chr3 (125-165)||(49031575-49031615)
[»] chr4 (21 HSPs)
chr4 (127-180)||(32365674-32365727)
chr4 (126-174)||(5234484-5234532)
chr4 (126-165)||(23094375-23094414)
chr4 (127-180)||(28899222-28899275)
chr4 (126-166)||(9162065-9162105)
chr4 (126-174)||(54036542-54036590)
chr4 (130-180)||(22072263-22072313)
chr4 (122-180)||(30973592-30973650)
chr4 (130-180)||(48326555-48326605)
chr4 (123-180)||(31657654-31657711)
chr4 (125-166)||(31804361-31804402)
chr4 (127-180)||(37731926-37731979)
chr4 (127-180)||(39241308-39241361)
chr4 (125-165)||(15638159-15638199)
chr4 (126-178)||(27384186-27384238)
chr4 (128-180)||(28676159-28676211)
chr4 (126-166)||(36444427-36444467)
chr4 (126-166)||(38864768-38864808)
chr4 (126-166)||(51318702-51318742)
chr4 (125-165)||(51359823-51359863)
chr4 (125-165)||(52669642-52669682)
[»] chr2 (25 HSPs)
chr2 (124-180)||(4228945-4229001)
chr2 (124-180)||(14891096-14891152)
chr2 (124-180)||(37966364-37966420)
chr2 (125-180)||(22353182-22353237)
chr2 (126-166)||(44950733-44950773)
chr2 (127-166)||(39247495-39247534)
chr2 (123-174)||(44058727-44058778)
chr2 (127-165)||(5095986-5096024)
chr2 (126-180)||(8482239-8482293)
chr2 (126-180)||(19695698-19695752)
chr2 (128-166)||(26321729-26321767)
chr2 (128-166)||(26321897-26321935)
chr2 (126-180)||(29795446-29795500)
chr2 (126-180)||(42607537-42607591)
chr2 (127-180)||(12191958-12192011)
chr2 (127-180)||(25801820-25801873)
chr2 (126-179)||(33737341-33737394)
chr2 (127-180)||(42866762-42866815)
chr2 (127-180)||(45202139-45202192)
chr2 (148-180)||(9377489-9377521)
chr2 (126-174)||(27329122-27329170)
chr2 (130-166)||(30339901-30339937)
chr2 (125-165)||(34913090-34913130)
chr2 (125-165)||(36909876-36909916)
chr2 (132-180)||(44018068-44018116)
[»] chr8 (18 HSPs)
chr8 (125-180)||(5502369-5502424)
chr8 (127-178)||(30112820-30112871)
chr8 (130-180)||(14710900-14710950)
chr8 (126-179)||(40413357-40413410)
chr8 (125-165)||(36064028-36064068)
chr8 (126-166)||(39021475-39021515)
chr8 (125-180)||(7010683-7010738)
chr8 (127-174)||(35356180-35356227)
chr8 (127-166)||(41344701-41344740)
chr8 (125-180)||(42569735-42569790)
chr8 (125-180)||(45405826-45405881)
chr8 (126-180)||(5740792-5740846)
chr8 (128-174)||(32020478-32020524)
chr8 (126-180)||(37392135-37392189)
chr8 (128-165)||(6806909-6806946)
chr8 (124-165)||(17775462-17775503)
chr8 (124-165)||(42443101-42443142)
chr8 (126-166)||(40842013-40842053)
[»] chr7 (20 HSPs)
chr7 (126-180)||(5905972-5906026)
chr7 (126-180)||(41985107-41985161)
chr7 (126-183)||(31274544-31274601)
chr7 (124-180)||(3293138-3293194)
chr7 (129-180)||(237026-237077)
chr7 (126-180)||(2469702-2469756)
chr7 (126-180)||(6822540-6822594)
chr7 (126-180)||(22330638-22330692)
chr7 (127-165)||(29763830-29763868)
chr7 (126-180)||(37351997-37352051)
chr7 (126-180)||(37856172-37856226)
chr7 (127-165)||(41080126-41080164)
chr7 (127-165)||(44175545-44175583)
chr7 (122-180)||(45420067-45420125)
chr7 (125-166)||(19426578-19426619)
chr7 (127-180)||(37832450-37832503)
chr7 (121-165)||(5068656-5068700)
chr7 (126-166)||(24700120-24700160)
chr7 (125-165)||(27164870-27164910)
chr7 (128-176)||(38218362-38218410)
[»] chr6 (9 HSPs)
chr6 (126-180)||(3180010-3180064)
chr6 (126-166)||(15722535-15722575)
chr6 (126-180)||(31517187-31517241)
chr6 (125-182)||(2241823-2241880)
chr6 (125-166)||(7636460-7636501)
chr6 (125-166)||(10521124-10521165)
chr6 (125-166)||(30714678-30714719)
chr6 (124-160)||(9851339-9851375)
chr6 (130-162)||(14426951-14426983)
[»] scaffold0154 (1 HSPs)
scaffold0154 (123-166)||(4311-4354)
[»] scaffold0054 (1 HSPs)
scaffold0054 (126-180)||(31607-31661)
[»] scaffold0004 (1 HSPs)
scaffold0004 (125-165)||(249175-249215)


Alignment Details
Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 895794 - 895744
Alignment:
Q  41 gttaaaactagattatttattttggttgtaatattctttgatcaacaattc 91  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  895794 gttaaaactagattatttatgttggttgtaatattctttgatcaacaattc 895744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 35814448 - 35814490
Alignment:
Q  122 tattagagaaatgatatttgtactatcattttgtgataacttt 164  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  35814448 tattagagaaatgatatttgtacaaccattttgtgataacttt 35814490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 6865850 - 6865794
Alignment:
Q  124 ttagagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||||| | || ||||||| |||||| ||||||||| |||||    
T  6865850 ttagagaaatgatatttgtacaaccactttgtgacaactttctctctcatactcaca 6865794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 12878755 - 12878807
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattca 178  Q
    ||||||||||||||||||| | |||||| | |||||||| |||||||||||||    
T  12878755 agagaaatgatatttgtacaaccattttattataactttctctctcatattca 12878807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 41383429 - 41383386
Alignment:
Q  123 attagagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    ||||||||| |||||||||||| | |||||||||||||||||||    
T  41383429 attagagaactgatatttgtacaaccattttgtgataacttttt 41383386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 372781 - 372727
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||| ||||||| | |||||||||| |||||| ||||||||| |||||    
T  372781 agagaaatgatttttgtacaaccattttgtgacaactttctctctcatactcaca 372727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 4434481 - 4434535
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| | |||||| ||| || ||||||||||||| |||||    
T  4434481 agagaaatgatatttgtacaaccattttttgacaattttttctctcatactcaca 4434535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 14206399 - 14206453
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| | |||||| ||| |||||| ||||||||| |||||    
T  14206399 agagaaatgatatttgtacaaccattttttgacaactttctctctcatactcaca 14206453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 27440479 - 27440517
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  27440479 gagaaatgatatttgtacaatcattttgtgacaactttt 27440517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 38010872 - 38010910
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  38010872 gagaaatgatatttgtacaatcaatttgtgataactttt 38010910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 4098626 - 4098675
Alignment:
Q  130 aaatgatatttgtactatcattttgtgataactttttctctcatattcac 179  Q
    ||||||||||||||| |  ||||||||| |||||| ||||||||||||||    
T  4098626 aaatgatatttgtacaactattttgtgacaactttatctctcatattcac 4098675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 6964442 - 6964402
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    ||||||||||||||||||| |||| ||||||| ||||||||    
T  6964442 agagaaatgatatttgtacaatcaatttgtgaaaacttttt 6964402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 20720078 - 20720022
Alignment:
Q  124 ttagagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||| |||||||| |||  ||||||| ||| ||| ||||||||||||||||||    
T  20720078 ttagagaattgatatttatacattcattttatgacaacattttctctcatattcaca 20720022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 16836175 - 16836122
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||| |||||    
T  16836175 gagaaatgatatttgtacaatcattttgtgacaactttttctctcatactcaca 16836122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 50797790 - 50797844
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||||||| |||||    
T  50797790 agagaaatgatatttgtacaatcattttgtgacaactttctctctcatactcaca 50797844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 27687580 - 27687526
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| | |||||||||| |||||| ||||||||| |||||    
T  27687580 agagaaatgatatttgtacaaccattttgtgacaactttatctctcatactcaca 27687526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 40596115 - 40596061
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| | |||||||||| |||||| ||||||||| |||||    
T  40596115 agagaaatgatatttgtacaaccattttgtgacaactttctctctcatactcaca 40596061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 41507254 - 41507201
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||||| | |||||||||| |||||| ||||||||| |||||    
T  41507254 gagaaatgatatttgtacaaccattttgtgacaactttctctctcatactcaca 41507201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 1690445 - 1690493
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcata 174  Q
    |||||||| |||||||||| | |||||||||| ||||||||||||||||    
T  1690445 agagaaataatatttgtacaaccattttgtgacaactttttctctcata 1690493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 34941993 - 34941961
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtga 157  Q
    |||||||||||||||||||||||||||||||||    
T  34941993 tagagaaatgatatttgtactatcattttgtga 34941961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 51168841 - 51168801
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  51168841 tagagaaatgatacttgtacaatcattttgtgataactttt 51168801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 18336158 - 18336221
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttttctctcatattcacacttgttttta 190  Q
    ||||||||||||||| ||  ||||||||||| |||||| ||||||||| ||||| | |||||||    
T  18336158 gagaaatgatatttgaacattcattttgtgacaactttctctctcatactcacattagttttta 18336221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 27352629 - 27352668
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttt 165  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  27352629 agagaaatgatatttgtacaaccattttgtgataactttt 27352668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 611696 - 611642
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||| || ||||||||| ||||| ||| ||||||| |||||||    
T  611696 agagaaatgatatttgaacaatcattttgggataattttctctctcaaattcaca 611642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 29489431 - 29489393
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataacttt 164  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  29489431 agagaaatgatatttgtacaaccattttgtgataacttt 29489393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 41029066 - 41029028
Alignment:
Q  128 agaaatgatatttgtactatcattttgtgataacttttt 166  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  41029066 agaaatgatatttgtacaatcattttgtgataaattttt 41029028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 44518022 - 44517968
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||| |||||||||  |||||||||||| || ||| |||||||||||||||    
T  44518022 agagaaatcatatttgtataatcattttgtgacaattttctctctcatattcaca 44517968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 49453490 - 49453544
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| | || ||||||| |||||| ||||||||| |||||    
T  49453490 agagaaatgatatttgtacaaccactttgtgacaactttctctctcatactcaca 49453544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 52714979 - 52715017
Alignment:
Q  128 agaaatgatatttgtactatcattttgtgataacttttt 166  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  52714979 agaaatgatatttgtacaatcattttgtgacaacttttt 52715017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 19442503 - 19442544
Alignment:
Q  124 ttagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||||||||||||||||| || |||||||||||| |||||||    
T  19442503 ttagagaaatgatatttgaacaatcattttgtgacaactttt 19442544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 26101391 - 26101432
Alignment:
Q  124 ttagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    ||||||||||||||||||||| || |||||||||||| ||||    
T  26101391 ttagagaaatgatatttgtacaattattttgtgataattttt 26101432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 40139126 - 40139179
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||||| | |||||| ||| |||||| ||||||||| |||||    
T  40139126 gagaaatgatatttgtacaaccattttatgacaactttctctctcatactcaca 40139179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 43457893 - 43457852
Alignment:
Q  124 ttagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    ||||||||||||||||||||| | ||||||| ||||||||||    
T  43457893 ttagagaaatgatatttgtacaaccattttgcgataactttt 43457852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 26501293 - 26501333
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||||||||||||||||||| | |||||||| |||||||||    
T  26501293 tagagaaatgatatttgtacaaccattttgtaataactttt 26501333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 35846950 - 35846910
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    ||||||||||||||||||||||| ||||| |||||| ||||    
T  35846950 tagagaaatgatatttgtactattattttttgataaatttt 35846910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 43612141 - 43612093
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcata 174  Q
    ||||||||||||||||||| | |||||| ||| |||||| |||||||||    
T  43612141 agagaaatgatatttgtacaaccattttatgacaactttctctctcata 43612093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 51571416 - 51571468
Alignment:
Q  128 agaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||| | || ||| ||| |||||| |||||||||||||||    
T  51571416 agaaatgatatttgtacaaccactttttgacaactttctctctcatattcaca 51571468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 43169814 - 43169760
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| | |||||||||| |||||||||||||||| |||||    
T  43169814 agagaaatgatatttgtacaaccattttgtgacaactttttctctcatactcaca 43169760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 47683798 - 47683854
Alignment:
Q  124 ttagagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||||| | |||||||||| |||||| ||||||||| |||||    
T  47683798 ttagagaaatgatatttgtacaaccattttgtgacaactttctctctcatactcaca 47683854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 46952948 - 46953002
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| | |||||| |||||||||| ||||||||| |||||    
T  46952948 agagaaatgatatttgtacaaccattttttgataactttctctctcatactcaca 46953002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 52431261 - 52431207
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||| |||||| ||| |||||||| |||||||||| |||||||||||||||    
T  52431261 agagaaataatatttatacaatcattttatgataactttctctctcatattcaca 52431207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 1765403 - 1765451
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcata 174  Q
    |||||||||||||||||||  ||||||||||| |||||| |||||||||    
T  1765403 agagaaatgatatttgtacattcattttgtgacaactttctctctcata 1765451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 27198232 - 27198193
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttt 165  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  27198232 agagaaatgatatttgtacaatcattttttgataactttt 27198193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 47774047 - 47774008
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  47774047 agagaaatgatatttgtacattcattttgtgataactttt 47774008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 53473609 - 53473648
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttt 165  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  53473609 agagaaatgatatttgtacaatcaatttgtgataactttt 53473648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 39928980 - 39929022
Alignment:
Q  128 agaaatgatatttgtactatcattttgtgataactttttctct 170  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||    
T  39928980 agaaacgatatttgtacaatcattttgtgataactttctctct 39929022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 49361896 - 49361842
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| ||||||||   | |||||||||||||||| |||||    
T  49361896 agagaaatgatatttgtacaatcatttttgtacaactttttctctcatactcaca 49361842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 9753230 - 9753283
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||| || |||||||||||| || ||| ||||||||| |||||    
T  9753230 gagaaatgatatttgaacaatcattttgtgacaattttatctctcatactcaca 9753283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 40419712 - 40419675
Alignment:
Q  128 agaaatgatatttgtactatcattttgtgataactttt 165  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  40419712 agaaatgatatttgtacaatcattttgtgataattttt 40419675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 44910694 - 44910735
Alignment:
Q  124 ttagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||||||||||||||||||||  ||||||| |||||||||||    
T  44910694 ttagagaaatgatatttgtacattcattttatgataactttt 44910735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 50146486 - 50146535
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttttctctcata 174  Q
    |||||||||||||||||||  |||||||||||| || ||| |||||||||    
T  50146486 tagagaaatgatatttgtataatcattttgtgacaattttctctctcata 50146535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 55344368 - 55344331
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactt 163  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  55344368 agagaaatgatatttgtacaaccattttgtgataactt 55344331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 11056985 - 11056929
Alignment:
Q  124 ttagagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||||| |  ||||| ||| |||||| ||| |||||||||||    
T  11056985 ttagagaaatgatatttgtacaacaattttttgacaactttctctttcatattcaca 11056929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 11225202 - 11225162
Alignment:
Q  124 ttagagaaatgatatttgtactatcattttgtgataacttt 164  Q
    ||||||||||||||||||||| || ||||| ||||||||||    
T  11225202 ttagagaaatgatatttgtacgattattttttgataacttt 11225162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 31366917 - 31366885
Alignment:
Q  131 aatgatatttgtactatcattttgtgataactt 163  Q
    |||||||||||||| ||||||||||||||||||    
T  31366917 aatgatatttgtacaatcattttgtgataactt 31366885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 34021536 - 34021496
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||||||||||||||||||| |||| ||||||| |||||||    
T  34021536 tagagaaatgatatttgtacaatcaatttgtgacaactttt 34021496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 35074162 - 35074122
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    ||||||||||||||||||| ||||||||| || ||||||||    
T  35074162 agagaaatgatatttgtacaatcattttgggacaacttttt 35074122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 38957574 - 38957519
Alignment:
Q  124 ttagagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||||| |  ||||| ||| |||||||||||||||| |||||    
T  38957574 ttagagaaatgatatttgtacaactatttt-tgacaactttttctctcatactcaca 38957519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 47849671 - 47849711
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    ||||||||||||||||||| | ||||||||||||| |||||    
T  47849671 agagaaatgatatttgtacaaccattttgtgataatttttt 47849711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 49031615 - 49031575
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||| ||||||||||||||| ||||||| ||||||||||||    
T  49031615 tagaaaaatgatatttgtacaatcatttcgtgataactttt 49031575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 32365727 - 32365674
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||||| | |||||||||| |||||| |||||||||||||||    
T  32365727 gagaaatgatatttgtacaaccattttgtgacaactttctctctcatattcaca 32365674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 5234532 - 5234484
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcata 174  Q
    ||||||||||||||||||| |||| |||||||||||||| |||||||||    
T  5234532 agagaaatgatatttgtacaatcactttgtgataactttctctctcata 5234484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 23094375 - 23094414
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttt 165  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  23094375 agagaaatgatatttgtacaatcattttgtgataactttt 23094414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 28899275 - 28899222
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||||| |||||||||  | |||||| |||||||||||||||    
T  28899275 gagaaatgatatttgtacaatcattttggtacaactttctctctcatattcaca 28899222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 9162065 - 9162105
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  9162065 agagaaatgatatttgtacaatcattttgtgacaacttttt 9162105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 54036590 - 54036542
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcata 174  Q
    ||||||||||||||||||| | |||||||||| |||||| |||||||||    
T  54036590 agagaaatgatatttgtacaaccattttgtgacaactttatctctcata 54036542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 22072263 - 22072313
Alignment:
Q  130 aaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||| || |||||||||| | |||||||||||||||| |||||    
T  22072263 aaatgatatttgaacaatcattttgttacaactttttctctcatactcaca 22072313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 30973592 - 30973650
Alignment:
Q  122 tattagagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||||||| | || ||| ||| |||||||||| ||||| |||||    
T  30973592 tattagagaaatgatatttgtacaaccactttatgacaactttttctttcatactcaca 30973650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 48326555 - 48326605
Alignment:
Q  130 aaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||| | || ||||||| |||||||||||||||| |||||    
T  48326555 aaatgatatttgtacaaccactttgtgacaactttttctctcatactcaca 48326605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 31657654 - 31657711
Alignment:
Q  123 attagagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| ||   |||||||||| |||||| ||||||||| |||||    
T  31657654 attagagaaatgatatttgaacatccattttgtgacaactttctctctcatactcaca 31657711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 31804402 - 31804361
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    |||||||||||||||||||| |||| |||||||||| |||||    
T  31804402 tagagaaatgatatttgtacaatcactttgtgataatttttt 31804361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 37731926 - 37731979
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||||| |||||||||  | |||||| ||||||||| |||||    
T  37731926 gagaaatgatatttgtacaatcattttggtacaactttctctctcatactcaca 37731979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 39241361 - 39241308
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||||| | || ||||||| |||||| ||||||||| |||||    
T  39241361 gagaaatgatatttgtacaaccaatttgtgacaactttctctctcatactcaca 39241308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 15638159 - 15638199
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||||||||||||||||||| |||||||| ||| |||||||    
T  15638159 tagagaaatgatatttgtacaatcattttttgacaactttt 15638199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 27384186 - 27384238
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattca 178  Q
    ||||||||||||||||||| | |||||| | | |||||| |||||||||||||    
T  27384186 agagaaatgatatttgtacaaccattttattacaactttctctctcatattca 27384238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 28676211 - 28676159
Alignment:
Q  128 agaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||| | |||||||||| |||||| ||| ||||| |||||    
T  28676211 agaaatgatatttgtacaaccattttgtgacaactttctctttcatactcaca 28676159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 36444467 - 36444427
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    ||||||||||||||||||| | |||||| ||||||||||||    
T  36444467 agagaaatgatatttgtacaaccattttatgataacttttt 36444427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 38864808 - 38864768
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    ||||||||||||||||||| || ||||||||| ||||||||    
T  38864808 agagaaatgatatttgtacaattattttgtgacaacttttt 38864768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 51318702 - 51318742
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    ||||||||||||||||||| | || ||||||||||||||||    
T  51318702 agagaaatgatatttgtacaaccactttgtgataacttttt 51318742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 51359863 - 51359823
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||||||||||||||||||| | |||||||||| |||||||    
T  51359863 tagagaaatgatatttgtacaaccattttgtgacaactttt 51359823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 52669682 - 52669642
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||||||||||||||||||| | || |||||||||||||||    
T  52669682 tagagaaatgatatttgtacaaacaatttgtgataactttt 52669642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 4229001 - 4228945
Alignment:
Q  124 ttagagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||| |||||||||||| || || ||||||||||||||||||||||| ||||||||    
T  4229001 ttagataaatgatatttgaacaataattttgtgataactttttctctcgtattcaca 4228945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 14891152 - 14891096
Alignment:
Q  124 ttagagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||||| |  |||||||||||||||| | |||||||||||||    
T  14891152 ttagagaaatgatatttgtacaactattttgtgataactttctttctcatattcaca 14891096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 37966364 - 37966420
Alignment:
Q  124 ttagagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||||| | || ||||||| |||||||||||||||| |||||    
T  37966364 ttagagaaatgatatttgtacaaccaatttgtgacaactttttctctcatactcaca 37966420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 22353237 - 22353182
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||||||| |||||||||||| |||||| | ||||||| |||||    
T  22353237 tagagaaatgatatttgtacaatcattttgtgacaactttctttctcatactcaca 22353182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 44950773 - 44950733
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  44950773 agagaaatgatatttgtacaatcatattgtgataacttttt 44950733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 39247534 - 39247495
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  39247534 gagaaatgatatttgtacaaccattttgtgataacttttt 39247495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 44058727 - 44058778
Alignment:
Q  123 attagagaaatgatatttgtactatcattttgtgataactttttctctcata 174  Q
    |||||||||||||||||||||| |||||||| | ||||| || |||||||||    
T  44058727 attagagaaatgatatttgtacaatcattttttaataacgttctctctcata 44058778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 5096024 - 5095986
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  5096024 gagaaatgatatttgtacaatcattttgtgataattttt 5095986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 8482293 - 8482239
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| | || ||| ||| |||||| |||||||||||||||    
T  8482293 agagaaatgatatttgtacaaccactttatgacaactttctctctcatattcaca 8482239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 19695752 - 19695698
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| |||| ||| ||| |||||| ||||| |||||||||    
T  19695752 agagaaatgatatttgtacaatcactttttgacaactttctctcttatattcaca 19695698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 26321767 - 26321729
Alignment:
Q  128 agaaatgatatttgtactatcattttgtgataacttttt 166  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  26321767 agaaatgatatttgtacaaccattttgtgataacttttt 26321729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 26321935 - 26321897
Alignment:
Q  128 agaaatgatatttgtactatcattttgtgataacttttt 166  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  26321935 agaaatgatatttgtacaaccattttgtgataacttttt 26321897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 29795446 - 29795500
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| | |||||||||| |||||| |||| |||| |||||    
T  29795446 agagaaatgatatttgtacaaccattttgtgacaactttctctcacatactcaca 29795500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 42607591 - 42607537
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| || ||||||||| || ||| ||||||||| |||||    
T  42607591 agagaaatgatatttgtacaattattttgtgacaattttctctctcatactcaca 42607537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 12191958 - 12192011
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||||  | |||| | |||||||||| |||||||||||||||    
T  12191958 gagaaatgatatttgtataaccattatatgataactttctctctcatattcaca 12192011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 25801873 - 25801820
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||||| | || ||||||| |||||| ||||||||| |||||    
T  25801873 gagaaatgatatttgtacaaccaatttgtgacaactttatctctcatactcaca 25801820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 33737394 - 33737341
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcac 179  Q
    |||||||||||||||| |||| |||||||||| || ||| ||||||||| ||||    
T  33737394 agagaaatgatatttgaactaccattttgtgacaaatttctctctcatactcac 33737341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 42866762 - 42866815
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||| ||   |||||||||| |||||||||||||||| |||||    
T  42866762 gagaaatgatatttgaacgtccattttgtgacaactttttctctcatactcaca 42866815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 45202192 - 45202139
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||||| | |||||| | | |||||| |||||||||||||||    
T  45202192 gagaaatgatatttgtacaaccatttttttacaactttctctctcatattcaca 45202139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 9377489 - 9377521
Alignment:
Q  148 cattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||| |||||||||||||||    
T  9377489 cattttgtgataactttctctctcatattcaca 9377521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 27329170 - 27329122
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcata 174  Q
    ||||||||||||||||||| |||||||||  | |||||| |||||||||    
T  27329170 agagaaatgatatttgtacaatcattttggtacaactttctctctcata 27329122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 30339937 - 30339901
Alignment:
Q  130 aaatgatatttgtactatcattttgtgataacttttt 166  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  30339937 aaatgatatttgtacaatcattttttgataacttttt 30339901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 34913090 - 34913130
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||||||||||||||||||| |||||||| | |||||||||    
T  34913090 tagagaaatgatatttgtacaatcattttttaataactttt 34913130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 36909916 - 36909876
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||||||||||||||||||| | |||||||||| |||||||    
T  36909916 tagagaaatgatatttgtacaaccattttgtgacaactttt 36909876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 44018068 - 44018116
Alignment:
Q  132 atgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||| | |||||||||| ||||||||| |||||| |||||    
T  44018068 atgatatttgtacaaccattttgtgacaactttttcactcatactcaca 44018116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 5502369 - 5502424
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||||||| | || ||||||| |||||| |||||||||||||||    
T  5502369 tagagaaatgatatttgtacaaccactttgtgacaactttctctctcatattcaca 5502424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 30112871 - 30112820
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttttctctcatattca 178  Q
    ||||||| |||||||||| ||||||||||||||||||| ||| |||||||||    
T  30112871 gagaaattatatttgtacaatcattttgtgataactttctctttcatattca 30112820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 14710950 - 14710900
Alignment:
Q  130 aaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||| |||||    
T  14710950 aaatgatatttgtacaatcattttgtgacaactttctctctcatactcaca 14710900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 40413410 - 40413357
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcac 179  Q
    ||||||||||||||||||| || ||||||||| |||||| ||||||||| ||||    
T  40413410 agagaaatgatatttgtacaattattttgtgacaactttctctctcatactcac 40413357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 36064028 - 36064068
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  36064028 tagagaaatgatatttgtacaatcattttgtgacaactttt 36064068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 39021515 - 39021475
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  39021515 agagaaatgatatttgtacaaccattttgtgataacttttt 39021475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 7010683 - 7010738
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||||||| |||||||| ||| || ||| ||||||||| |||||    
T  7010683 tagagaaatgatatttgtacaatcattttttgacaattttctctctcatactcaca 7010738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 35356227 - 35356180
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttttctctcata 174  Q
    ||||||||||||||| ||  |||||||||||||||||| |||||||||    
T  35356227 gagaaatgatatttgaacattcattttgtgataactttctctctcata 35356180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 41344740 - 41344701
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  41344740 gagaaatgatatttgtacaatcagtttgtgataacttttt 41344701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 42569790 - 42569735
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||| ||  ||||||| ||| |||||| |||||||||||||||    
T  42569790 tagagaaatgatatttgaacattcattttatgacaactttctctctcatattcaca 42569735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 45405881 - 45405826
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||||||| | |||||||  | |||||||||||||||| |||||    
T  45405881 tagagaaatgatatttgtacaaccattttgatacaactttttctctcatactcaca 45405826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 5740846 - 5740792
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| | || ||| ||| |||||||||||||||| |||||    
T  5740846 agagaaatgatatttgtacaaccactttttgacaactttttctctcatactcaca 5740792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 32020524 - 32020478
Alignment:
Q  128 agaaatgatatttgtactatcattttgtgataactttttctctcata 174  Q
    ||||||||||||||||| | |||||| |||||||||| |||||||||    
T  32020524 agaaatgatatttgtacaaccattttttgataactttctctctcata 32020478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 37392189 - 37392135
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| | |||||| ||| |||||| ||||||||| |||||    
T  37392189 agagaaatgatatttgtacaaccattttttgacaactttctctctcatactcaca 37392135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 6806909 - 6806946
Alignment:
Q  128 agaaatgatatttgtactatcattttgtgataactttt 165  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  6806909 agaaatgatatttgtacaatcattttgtgacaactttt 6806946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 17775503 - 17775462
Alignment:
Q  124 ttagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||||||||||||||||| || |||||||||||| |||||||    
T  17775503 ttagagaaatgatatttgaacaatcattttgtgacaactttt 17775462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 42443101 - 42443142
Alignment:
Q  124 ttagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    ||||||||||||||||||||| ||||||| |||| |||||||    
T  42443101 ttagagaaatgatatttgtacaatcatttagtgacaactttt 42443142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 40842013 - 40842053
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    ||||||||||||||||||| | || ||||||||||||||||    
T  40842013 agagaaatgatatttgtacaaccactttgtgataacttttt 40842053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 5906026 - 5905972
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| |||||||||  |||||||| ||||||||| |||||    
T  5906026 agagaaatgatatttgtacaatcattttggtataactttctctctcatactcaca 5905972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 41985161 - 41985107
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| |||| ||||||| |||||| ||||||||| |||||    
T  41985161 agagaaatgatatttgtacaatcaatttgtgacaactttctctctcatactcaca 41985107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 31274601 - 31274544
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcacactt 183  Q
    ||||||||||||||||||| | || ||||||| |||||||||||| ||| ||||||||    
T  31274601 agagaaatgatatttgtacaaccaatttgtgacaactttttctcttatactcacactt 31274544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 3293138 - 3293194
Alignment:
Q  124 ttagagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||||| ||  |||||| |||| |||||| |||||||||||||||    
T  3293138 ttagagaaatgatatttgaacattcatttggtgacaactttctctctcatattcaca 3293194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 237026 - 237077
Alignment:
Q  129 gaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||| |||| ||||||| |||||| ||||||||| |||||    
T  237026 gaaatgatatttgtacaatcaatttgtgacaactttatctctcatactcaca 237077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 2469702 - 2469756
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| | || ||||||| |||||| ||||||||| |||||    
T  2469702 agagaaatgatatttgtacaaccactttgtgacaactttctctctcatactcaca 2469756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 6822594 - 6822540
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| | |||||| | | |||||||||||||||| |||||    
T  6822594 agagaaatgatatttgtacaaccattttctaacaactttttctctcatactcaca 6822540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 22330692 - 22330638
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| | || ||||||| |||||| ||||||||| |||||    
T  22330692 agagaaatgatatttgtacaaccactttgtgacaactttctctctcatactcaca 22330638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 29763830 - 29763868
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  29763830 gagaaatgatatttgtacaaccattttgtgataactttt 29763868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 37352051 - 37351997
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| | || ||||||| |||||| ||||||||| |||||    
T  37352051 agagaaatgatatttgtacaaccactttgtgacaactttctctctcatactcaca 37351997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 37856226 - 37856172
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| | |||||||||| |||||| |||| |||| |||||    
T  37856226 agagaaatgatatttgtacaaccattttgtgacaactttatctcacatactcaca 37856172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 41080126 - 41080164
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  41080126 gagaaatgatatttgtacaatcattttgtgacaactttt 41080164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 44175545 - 44175583
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttt 165  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  44175545 gagaaataatatttgtacaatcattttgtgataactttt 44175583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 45420125 - 45420067
Alignment:
Q  122 tattagagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||||||| || |  ||||| ||| |||||| |||||||||||||||    
T  45420125 tattagagaaatgatatttgaacaactattttttgacaactttctctctcatattcaca 45420067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 19426578 - 19426619
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    |||||||||||||||||||| | |||||||||| ||||||||    
T  19426578 tagagaaatgatatttgtacaaccattttgtgacaacttttt 19426619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 37832450 - 37832503
Alignment:
Q  127 gagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    |||||||||||||||||| |  ||||||||| |||| ||||||||||| |||||    
T  37832450 gagaaatgatatttgtacaactattttgtgacaactctttctctcatactcaca 37832503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 5068700 - 5068656
Alignment:
Q  121 atattagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||| ||||||||||||||||||| | |||||| |||||||||||    
T  5068700 atataagagaaatgatatttgtacaaccattttatgataactttt 5068656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 24700120 - 24700160
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    ||||||||||||||||||| |||||||||| | ||||||||    
T  24700120 agagaaatgatatttgtacaatcattttgtaacaacttttt 24700160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 27164910 - 27164870
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    |||||||||||||||||||| |||| ||||||| |||||||    
T  27164910 tagagaaatgatatttgtacaatcaatttgtgacaactttt 27164870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 38218410 - 38218362
Alignment:
Q  128 agaaatgatatttgtactatcattttgtgataactttttctctcatatt 176  Q
    ||||||||||||||||| |||||||||||| || ||| ||||| |||||    
T  38218410 agaaatgatatttgtacaatcattttgtgacaattttatctcttatatt 38218362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 3180064 - 3180010
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| |||||||| ||| |||||| ||||| |||||||||    
T  3180064 agagaaatgatatttgtacaatcattttttgacaactttatctcttatattcaca 3180010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 15722575 - 15722535
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  15722575 agagaaatgatatttgtacaatcattttgtgacaacttttt 15722535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 31517241 - 31517187
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| | || ||| ||| |||||||||||||||| |||||    
T  31517241 agagaaatgatatttgtacaaccactttttgacaactttttctctcatactcaca 31517187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 2241880 - 2241823
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttttctctcatattcacact 182  Q
    |||||||||||||||| ||| | || ||| ||| |||||||||||||||| |||||||    
T  2241880 tagagaaatgatatttatacaaccactttttgacaactttttctctcatactcacact 2241823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 7636501 - 7636460
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    |||||||||||||||||||| |||||||| | ||||||||||    
T  7636501 tagagaaatgatatttgtacaatcattttataataacttttt 7636460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 10521124 - 10521165
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    |||||||||||||||||||| || | ||||||||||||||||    
T  10521124 tagagaaatgatatttgtacaattactttgtgataacttttt 10521165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 30714678 - 30714719
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    |||||||||||||||||||| |||||||||||| | ||||||    
T  30714678 tagagaaatgatatttgtacaatcattttgtgacagcttttt 30714719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 9851375 - 9851339
Alignment:
Q  124 ttagagaaatgatatttgtactatcattttgtgataa 160  Q
    |||||||||||| |||||||| |||||||||||||||    
T  9851375 ttagagaaatgaaatttgtacaatcattttgtgataa 9851339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 14426951 - 14426983
Alignment:
Q  130 aaatgatatttgtactatcattttgtgataact 162  Q
    ||||||||||||||| |||||||||||||||||    
T  14426951 aaatgatatttgtacaatcattttgtgataact 14426983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 4311 - 4354
Alignment:
Q  123 attagagaaatgatatttgtactatcattttgtgataacttttt 166  Q
    |||||||||||||||||||||| | |||||| ||||||||||||    
T  4311 attagagaaatgatatttgtacaaccattttatgataacttttt 4354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 31661 - 31607
Alignment:
Q  126 agagaaatgatatttgtactatcattttgtgataactttttctctcatattcaca 180  Q
    ||||||||||||||||||| | |||||| ||| |||||| ||||||||| |||||    
T  31661 agagaaatgatatttgtacaaccattttttgacaactttctctctcatactcaca 31607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 249215 - 249175
Alignment:
Q  125 tagagaaatgatatttgtactatcattttgtgataactttt 165  Q
    ||||||||||||||||| || |||| |||||||||||||||    
T  249215 tagagaaatgatatttgcacaatcaatttgtgataactttt 249175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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