View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2757_high_1 (Length: 478)
Name: NF2757_high_1
Description: NF2757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2757_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Complemental strand, 23697037 - 23696589
Alignment:
| Q |
18 |
acattgtgcacaaaataatctattacaatgaggacactcagaaacggttacaacttcctcttcatcattcaccaacatagctgaacaatcattaaaagga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23697037 |
acattgtgcacaaaataatctattacaatgaggacactcagaaacggttacaacttcctcttcatcattcaccaacatagctgaacaatcattaaaagga |
23696938 |
T |
|
| Q |
118 |
cagtaaaatttttgtgaatctaacaccatattctcacaaagtgcctttccccatatctcaaacacatcctttggtataagggtgctacaattatgaggct |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23696937 |
cagtacaatttttgtgaatctaacaccatattctcacaaagtgcctttccccatctctcaaacacatcctttggtataagggtgctacaattatgaggct |
23696838 |
T |
|
| Q |
218 |
ccaatataccattgcaatttggataaggacattttaccattgctatattctcttgaatttttgcagctagataacttccaacacaatattcacagaaaga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23696837 |
ccaatataccattgcaatttggataaggacattttaccattgctatattctcttgaatttttgcagctagataacttccaacacatccttcacagaaaga |
23696738 |
T |
|
| Q |
318 |
gtgtgaacagttttggtttttaaacatatcttcaacaggtttagcttccatgcagatagcacagtaggatt-ttttcaattgagaagaagattcaccttc |
416 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
23696737 |
gtgtgaacagttttggttttcgaacatttctgcagcaggtttagcttccatgcagatagcacagtaggatttttttcaattgagaagaagattcacattc |
23696638 |
T |
|
| Q |
417 |
aacaggtttgaggttagtttcagtatcaacatttgcatgcaccacaggt |
465 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23696637 |
aacaggtttgaggttagtttcagtatcaacatttgcatgcaccgcaggt |
23696589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 23694906 - 23694517
Alignment:
| Q |
18 |
acattgtgcacaaaataatctattacaatgaggacactcagaaacggttacaacttcctcttcatcattcaccaacatagctgaacaatcattaaaagga |
117 |
Q |
| |
|
|||||||||||| || ||||||| |||||| ||||| || ||| | || |||| | ||| ||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
23694906 |
acattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcattaaaagga |
23694807 |
T |
|
| Q |
118 |
cagtaaaatttttgtgaatctaacaccatattctcacaaagtgcctttccccatatctcaaacacatcctttggtataagggtgctacaattatgaggct |
217 |
Q |
| |
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|| |||||||| |||||| ||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||| || | ||||||| |||||||| |
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| T |
23694806 |
caataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttggtaaaattgaactacaatcatgaggct |
23694707 |
T |
|
| Q |
218 |
ccaatataccattgcaatttggataaggacattttaccattgctatattctcttgaatttttgcagctagataacttccaacacaatattcacagaaaga |
317 |
Q |
| |
|
|||| ||| ||||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| ||||| |||||||||||| |
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| T |
23694706 |
ccaaaatatcattgcattttggatcaggacattttaccattgatatactctcttgaatttttgcagctagatatcttccaagacaatcttcacagaaaga |
23694607 |
T |
|
| Q |
318 |
gtgtgaacagttttggtttttaaacatatcttcaacaggtttagcttccatgcagatagcacagtaggattttttcaattgagaagaaga |
407 |
Q |
| |
|
|||||||| |||||||| | ||||| |||||||| |||||||||||||| || |||||||||||||||| |||||| ||||||||||| |
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|
| T |
23694606 |
atgtgaacatttttggttctggaacatttcttcaacgggtttagcttccatacaaatagcacagtaggattgtttcaactgagaagaaga |
23694517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 23700895 - 23701286
Alignment:
| Q |
18 |
acattgtgcacaaaataatctattacaatgaggacactcagaaacggttacaacttcctcttcatcattcaccaacatagctgaacaatcattaaaagga |
117 |
Q |
| |
|
|||||||||||| || ||||||| |||||| ||||| || ||| | || |||| | ||| ||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
23700895 |
acattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcattaaaagga |
23700994 |
T |
|
| Q |
118 |
cagtaaaatttttgtgaatctaacaccatattctcacaaagtgcctttccccatatctcaaacacatcctttggtataagggtgctacaattatgaggct |
217 |
Q |
| |
|
|| |||||||| |||||| |||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||| || | | ||||| |||||||| |
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|
| T |
23700995 |
caataaaatttctgtgaacctaacaccatattctcacaaagtgaattttcccatctatcaaacacatcctttggtaaaattgaacaacaatcatgaggct |
23701094 |
T |
|
| Q |
218 |
ccaatataccattgcaatttggataaggacattttaccattgctatattctcttg--aatttttgcagctagataacttccaacacaatattcacagaaa |
315 |
Q |
| |
|
|||| ||| ||||||| ||||||| ||||||||||||||||| |||| ||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
23701095 |
ccaaaatatcattgcattttggatcaggacattttaccattgatatactctcttgtgaatttttgcagctagatatcttccaacacaatattcacagaaa |
23701194 |
T |
|
| Q |
316 |
gagtgtgaacagttttggtttttaaacatatcttcaacaggtttagcttccatgcagatagcacagtaggattttttcaattgagaagaaga |
407 |
Q |
| |
|
||||||||||| ||| |||||| ||||| ||||||||||||||||||||||| |||||| |||| ||||||| |||||| ||||||||||| |
|
|
| T |
23701195 |
gagtgtgaacattttcggttttggaacatttcttcaacaggtttagcttccatacagatatcacaataggattgtttcaactgagaagaaga |
23701286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 8149038 - 8149347
Alignment:
| Q |
18 |
acattgtgcacaaaataatctattacaatgaggacactcagaaacggttacaacttcctcttcatcattcaccaacatagctgaacaatcattaaaagga |
117 |
Q |
| |
|
||||||||| || |||| ||||| |||||| ||||| || | || | |||||||| | | |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8149038 |
acattgtgcgcagaatagtctatgacaatgtggacattccgtaattctcacaacttcatttccatcattcaccaacatagctgaacaatccttaaaagga |
8149137 |
T |
|
| Q |
118 |
cagtaaaatttttgtgaatctaacaccatattctcacaaagtgcctttccccatatctcaaacacatcctttggtataagggtgctacaattatgaggct |
217 |
Q |
| |
|
|| |||| ||| | ||| | |||| | || || ||||| | ||||||| | || ||||||||||||||||||| | |||| | |||| | |
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|
| T |
8149138 |
caataaattttctttgatccgaacatcgaat---caactagtgcatctccccatctttcgaacacatcctttggtataattgaaatacattgttgagtgt |
8149234 |
T |
|
| Q |
218 |
ccaatataccattgcaatttggataaggacattttaccattgctatattctcttgaatttttgcagctagataacttccaacacaatattcacagaaaga |
317 |
Q |
| |
|
| || ||| |||||||||||||| ||||||||||| ||||| | |||||||||||||| |||||||| | ||| ||||||||| |||||||||||| |
|
|
| T |
8149235 |
caaaattactattgcaatttggatcaggacattttattgttgcttttttctcttgaattttcacagctagaaatcttgcaacacaatcttcacagaaaga |
8149334 |
T |
|
| Q |
318 |
gtgtgaacagttt |
330 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
8149335 |
gtgcgaacagttt |
8149347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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