View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2757_high_4 (Length: 250)
Name: NF2757_high_4
Description: NF2757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2757_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 25915527 - 25915676
Alignment:
| Q |
13 |
gtgagatgaagtaatcggtacttggtggttctttctagtatgtgtttttggattacaagattgtgtgaggaacaagaggcaatggtgattaatatatagt |
112 |
Q |
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| T |
25915527 |
gtgatatgaagtaatcggtacttggtggttctttctagtatgtgtttttggattacaagattgtgtgaggaacaagaggcaatggtgattaatatatagt |
25915626 |
T |
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| Q |
113 |
cttagtaaagaccaaatacatacatggaacaaagaaaatgtggacggtgg |
162 |
Q |
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| T |
25915627 |
cttagtaaagaccaaatacatacatggaacaaagaaaatgtggacggtgg |
25915676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 25915713 - 25915762
Alignment:
| Q |
184 |
ggaatctgaatgtttggtttcaaagttaatggaatattgaacaactatgt |
233 |
Q |
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| T |
25915713 |
ggaatctgaatgtttggtttcaaagttaatggaatattgaactactatgt |
25915762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 2548053 - 2548099
Alignment:
| Q |
185 |
gaatctgaatgtttggtttcaaagttaatggaatattgaacaactat |
231 |
Q |
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| T |
2548053 |
gaatctgaatgtttggttttaaagttaaaagaatattgaactactat |
2548099 |
T |
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