View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2757_low_2 (Length: 477)
Name: NF2757_low_2
Description: NF2757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2757_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 49 - 458
Target Start/End: Original strand, 13160081 - 13160490
Alignment:
| Q |
49 |
ataaactttataccattttgatgataaaagnnnnnnnnctattgatatgatcatatacnnnnnnnnnaagaaattacgatcatatacttaattaactgtt |
148 |
Q |
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| T |
13160081 |
ataaactttataccattttgatgataaaagaaaaaaaactattgatatgatcatatgctttttttttaagaaattacgatcatatacttaattaactgtt |
13160180 |
T |
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| Q |
149 |
ttttatcgtatcagatgctcaaataggaatatgttatggtatgatgggaaacaatctaccaccggcaaacgaggttataaatctctacaaagcaaacaac |
248 |
Q |
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| T |
13160181 |
ttttatcgtatcagatgctcaaataggaatatgttatggtatgatgggaaacaatctaccaccggcaaacgaggttataaatctctacaaagcaaacaac |
13160280 |
T |
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| Q |
249 |
attaagagaatgagactctacgatcctaatcaagctgctctaaatgcattaagaaattcaggcattgaactcattcttggtgtgccaaattccgaccttc |
348 |
Q |
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| T |
13160281 |
attaagagaatgagactctacgatcctaatcaagctgctctaaatgcattaagaaattcaggcattgaactcattcttggtgtgccaaattccgaccttc |
13160380 |
T |
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| Q |
349 |
aaaccctagccaccaactccgataatgcacgtcaatgggtacaaagaaatgtattgaacttctggcctagtgtcaaaattaagtatattgcagttggtaa |
448 |
Q |
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| T |
13160381 |
aaaccctagccaccaactccgataatgcacgtcaatgggtacaaagaaatgtattgaacttctggcctagtgtcaaaatcaagtatattgcagttggtaa |
13160480 |
T |
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| Q |
449 |
tgaagtgagt |
458 |
Q |
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| T |
13160481 |
tgaagtgagt |
13160490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 236 - 454
Target Start/End: Complemental strand, 13152970 - 13152752
Alignment:
| Q |
236 |
caaagcaaacaacattaagagaatgagactctacgatcctaatcaagctgctctaaatgcattaagaaattcaggcattgaactcattcttggtgtgcca |
335 |
Q |
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| T |
13152970 |
caaatcaaacaacatcaaaagaatgaggctatatgatccaaaccaagctgctcttgaagcacttagaaattctggcattgagcttatgttaggtgtgcca |
13152871 |
T |
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| Q |
336 |
aattccgaccttcaaaccctagccaccaactccgataatgcacgtcaatgggtacaaagaaatgtattgaacttctggcctagtgtcaaaattaagtata |
435 |
Q |
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| T |
13152870 |
aattctgatcttcaaaacattgctaccaacaatgacattgcaattcaatgggtacaaaaaaatgtactaaacttctaccctagtgtcaaaatcaaataca |
13152771 |
T |
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| Q |
436 |
ttgcagttggtaatgaagt |
454 |
Q |
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| T |
13152770 |
tcgcggttggtaatgaagt |
13152752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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