View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2758_high_3 (Length: 264)
Name: NF2758_high_3
Description: NF2758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2758_high_3 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 25 - 264
Target Start/End: Complemental strand, 33223219 - 33222980
Alignment:
| Q |
25 |
caaagggaaagtctaaaattatatttttctcaattgtagtatttaaaatgacatcaaataaaataacttttggtttttagtttgtggttctttannnnnn |
124 |
Q |
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| T |
33223219 |
caaagggaaagtctaaaattatatttttctcaattgtagtatttaaaatgacatcaaataaaataacttttggtttttagtttgtggttctttatttttt |
33223120 |
T |
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| Q |
125 |
nnnatttgtttacattctttatatatggactaatataccttaagcaaaagaaaagatagcagcagaattagcatcgaagtggaatcgaaaggaggaataa |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223119 |
tttatttgtttacattctttatatatggactaatataccttaagcaaaagaaaagatagcagcagaattagcatcgaagtggaatcgaaaggaggaataa |
33223020 |
T |
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| Q |
225 |
agcttccctttcaattccaatcaattaaccaaaagaaaat |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33223019 |
agcttccctttcaattccaatcaattaaccaaaagaaaat |
33222980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 33226189 - 33226128
Alignment:
| Q |
25 |
caaagggaaagtctaaaattatatttttctcaattgtagtatttaaaatgacatcaaataaa |
86 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33226189 |
caaagggaaagtctaaaattatatttttctcaattgtagtatttaaaatgatatcaaataaa |
33226128 |
T |
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