View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2758_low_5 (Length: 241)
Name: NF2758_low_5
Description: NF2758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2758_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 1845189 - 1844963
Alignment:
| Q |
1 |
ccatgcattgtgaatctcttaatcgtgttcttcaagttgtttgataggccataacaaagattaaaggttggaatgaagatgttcacctcaaagcttttca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1845189 |
ccatgcattgtgaatctcttaatcgtgttcttcaagttgtttgatagaccataacaaagattaaaggttggaatgaagatgttcacctcaaagcttttca |
1845090 |
T |
|
| Q |
101 |
ggctgacctttcgtcggttgagtcaattataaagttcagtacttccctgcggcagtggcttttgaattccgatttgcactgcttggtacaaatactaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1845089 |
ggctgacctttcgtcggttgagtcaattataaagttcagtacttccgtgcggcaatggcttttgaattccgatctgcactgcttggtacaaatactaata |
1844990 |
T |
|
| Q |
201 |
aacaatgctggaatacttgcaacatct |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
1844989 |
aacaatgctggaatacttgcaacatct |
1844963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 1838044 - 1838270
Alignment:
| Q |
1 |
ccatgcattgtgaatctcttaatcgtgttcttcaagttgtttgataggccataacaaagattaaaggttggaatgaagatgttcacctcaaagcttttca |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
1838044 |
ccatgcattgtgaagatcttaatcgtgttcttcccgttgtttgataggccataacaaagattaaaggttggaatgaggatgcccacctcaaagcttttca |
1838143 |
T |
|
| Q |
101 |
ggctgacctttcgtcggttgagtcaattataaagttcagtacttccctgcggcagtggcttttgaattccgatttgcactgcttggtacaaatactaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
1838144 |
ggctgacctttcgtcggttgagtcaattataaagttcagtacttccctgcggcagtggcttttggattccgatttgcactgctcggtacaaatactaata |
1838243 |
T |
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| Q |
201 |
aacaatgctggaatacttgcaacatct |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
1838244 |
aacaatgctggaatacttgcaacatct |
1838270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 41382462 - 41382254
Alignment:
| Q |
19 |
ttaatcgtgttcttcaagttgtttgataggccataacaaagattaaaggttggaatgaagatgttcacctcaaagcttttcaggctgacctttcgtcggt |
118 |
Q |
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||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |
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| T |
41382462 |
ttaattgtgttcttcccgttgtttgatagaccataacaaagattaaaggttggaatgaggatgcccacctcaaagctttttaggctgacctttcgtcggt |
41382363 |
T |
|
| Q |
119 |
tgagtcaattataaagttcagtacttccctgcggcagtggcttttgaattccgatttgcactgcttggtacaaatactaataaacaatgctggaatactt |
218 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
41382362 |
tgagtcaattataaagttcagtacttccttgcggcagtggcttttggattctgatttgcactgctcggtacagatactaataaacaatgctggaatactt |
41382263 |
T |
|
| Q |
219 |
gcaacatct |
227 |
Q |
| |
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|| |||||| |
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| T |
41382262 |
gccacatct |
41382254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 18632723 - 18632946
Alignment:
| Q |
4 |
tgcattgtgaatctcttaatcgtgttcttcaagttgtttgataggccataacaaagattaaaggttggaatgaagatgttcacctcaaagcttttcaggc |
103 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18632723 |
tgcattgtaaatctcgtaatcgtgttcttcaagttgttcgataggccataacaaagattaaaggttggaatgaagatgttcacctcaaagcttttcagac |
18632822 |
T |
|
| Q |
104 |
tgacctttcgtcggttgagtcaattataaagttcagtacttccctgcggcagtggcttttgaattccgatttgcactgcttggtacaaatactaataaac |
203 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||| |||||||||||||||| || |
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| T |
18632823 |
tgaccttttgtcggtggagtcaattataaagttcagtacttccctacggcagtggtttttggattccgatttgcactgctcggtacaaatactaatatac |
18632922 |
T |
|
| Q |
204 |
aatgctggaatacttgcaacatct |
227 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
18632923 |
aatgctggaatacttgcaacatct |
18632946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 18639356 - 18639130
Alignment:
| Q |
1 |
ccatgcattgtgaatctcttaatcgtgttcttcaagttgtttgataggccataacaaagattaaaggttggaatgaagatgttcacctcaaagcttttca |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
18639356 |
ccatgcattgtgaagatcttaatcgtgttcttcccgttgtttgatagaccataaaaaagattaaaggttggaatgaggatgcccacctcaaagcttttca |
18639257 |
T |
|
| Q |
101 |
ggctgacctttcgtcggttgagtcaattataaagttcagtacttccctgcggcagtggcttttgaattccgatttgcactgcttggtacaaatactaata |
200 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
18639256 |
ggctgatatttcgtcggctgagtcaattataaagttcggtacttccctgcggcaatggcttttggattccgatttgcactgctcggtacaaatactaata |
18639157 |
T |
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| Q |
201 |
aacaatgctggaatacttgcaacatct |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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|
| T |
18639156 |
aacaatgctggaatacttgcaacatct |
18639130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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