View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2759_high_1 (Length: 445)
Name: NF2759_high_1
Description: NF2759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2759_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 93 - 334
Target Start/End: Original strand, 29998294 - 29998526
Alignment:
| Q |
93 |
ctgcaggattaaaattaatgacttggtaaccaatattcatgtggaagaannnnnnnnnnnnnaaagaaatataaatacacactcaactacgtaatccatt |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29998294 |
ctgcaggattaaaattaatgacttggtaaccaatattcatgtggaag--tttttttttttttaaagaaatataaatacacactcaactacgtaatccatt |
29998391 |
T |
|
| Q |
193 |
gtacacaatcaaaaaatcttaaaatggaagaggaatctcaaacttttcttttacataggataaaccaaaattcgctggtgtaaacattatttgaccctaa |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29998392 |
gtacacaatcaaaaaatcttaaaatggaagaggaatctcaaacttttctttt-------ttaaaccaaaattcgctcgtgtaaacattatttgaccctaa |
29998484 |
T |
|
| Q |
293 |
aaataatgaaaatttagacttaaatatgcaatttaaccttag |
334 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29998485 |
aaataatgaatatttagacttaaatatgcaatttaaccttag |
29998526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 445
Target Start/End: Original strand, 29998878 - 29998909
Alignment:
| Q |
414 |
tccaatgtgtgccaaatattgtattcaaaaat |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
29998878 |
tccaatgtgtgccaaatattgtattcaaaaat |
29998909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 29998216 - 29998252
Alignment:
| Q |
15 |
gatctgggtttctcattgaacattctagaaaaagggg |
51 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| |
|
|
| T |
29998216 |
gatctgggtttctctttaaacattctagaaaaagggg |
29998252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University