View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2759_high_12 (Length: 229)

Name: NF2759_high_12
Description: NF2759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2759_high_12
NF2759_high_12
[»] chr4 (3 HSPs)
chr4 (22-83)||(13464487-13464548)
chr4 (73-124)||(13464427-13464478)
chr4 (102-131)||(13464397-13464426)
[»] chr3 (1 HSPs)
chr3 (69-126)||(52716490-52716547)
[»] chr8 (1 HSPs)
chr8 (69-126)||(14914358-14914415)


Alignment Details
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 13464548 - 13464487
Alignment:
Q  22 aaatagaagagaacaaatacaaagaggtttcgtaaaatagaaagagaaacgaaatcgaaatc 83  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  13464548 aaatagaagagaacgaatacgaagaggtttcgtaaaatagaaagagaaacgaaatcgaaatc 13464487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 13464478 - 13464427
Alignment:
Q  73 aaatcgaaatcaaaatatgaaagcgaaattgaaacggcgatggtgtgaaatc 124  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13464478 aaatcgaaatcaaaatatgaaagtgaaattgaaacggcgatggtgtgaaatc 13464427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 131
Target Start/End: Complemental strand, 13464426 - 13464397
Alignment:
Q  102 tgaaacggcgatggtgtgaaatcgacgacc 131  Q
    ||||||||||||||||||||||||||||||    
T  13464426 tgaaacggcgatggtgtgaaatcgacgacc 13464397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 52716547 - 52716490
Alignment:
Q  69 aacgaaatcgaaatcaaaatatgaaagcgaaattgaaacggcgatggtgtgaaatcga 126  Q
    ||||||| || ||||||||| |||||||||||| ||||||||||||||||||||||||    
T  52716547 aacgaaagcgtaatcaaaatctgaaagcgaaatcgaaacggcgatggtgtgaaatcga 52716490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 14914358 - 14914415
Alignment:
Q  69 aacgaaatcgaaatcaaaatatgaaagcgaaattgaaacggcgatggtgtgaaatcga 126  Q
    ||||||| || ||||||||| |||||| ||||  ||||||||||||||||||||||||    
T  14914358 aacgaaagcgcaatcaaaatctgaaagagaaaccgaaacggcgatggtgtgaaatcga 14914415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University