View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2759_high_13 (Length: 216)
Name: NF2759_high_13
Description: NF2759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2759_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 39195094 - 39194893
Alignment:
| Q |
1 |
ctagtacaatgttttcctatgatatcctcatttagttcattttttactactattagattttattgttcacacttggatttcacatgcattattgtttttc |
100 |
Q |
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| T |
39195094 |
ctagtacaatgttttcctatgatatcctcatttagttcattttttactacgattagattttattgttcacacttggatttcacatgcattattgtttttc |
39194995 |
T |
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| Q |
101 |
tagatgttattgctcgatgcattcaggcttcaaaagagtgtcatttagtgtgttatttatatgattaaaaacagacttaccattcttttgtttggccaca |
200 |
Q |
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| T |
39194994 |
tagatgttattgctcgatgcattcaggcttcaaaagagtgtcatttagtgtgttatttatatgattaaaaacagacttaccattcttttgtttggccaca |
39194895 |
T |
|
| Q |
201 |
gg |
202 |
Q |
| |
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|| |
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| T |
39194894 |
gg |
39194893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 39224403 - 39224210
Alignment:
| Q |
9 |
atgttttcctatgatatcctcatttagttcattttttactactattagattttattgttcacacttggatttcacatgcattattgtttttctagatgtt |
108 |
Q |
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||||||| ||||| ||||||| |||||||||||| |||||||| | | ||||||||||||| |||||||||||||||||||||||||||||||| || || |
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| T |
39224403 |
atgttttactatgctatcctcgtttagttcatttcttactactgtcaaattttattgttcaaacttggatttcacatgcattattgtttttctatatatt |
39224304 |
T |
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| Q |
109 |
attgctcgatgcattcaggcttcaaaagagtgtcatttagtgtgttatttatatgattaaaaacagacttaccattcttttgtttggccacagg |
202 |
Q |
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|||||| |||||| ||||||||||||| || |||||||||| ||||| |||| ||||| ||||||||| | |||||||||||||| || ||||| |
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| T |
39224303 |
attgcttgatgcactcaggcttcaaaaaagcgtcatttagtatgttacttatgtgattgaaaacagacatgccattcttttgttttgctacagg |
39224210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 39216699 - 39216592
Alignment:
| Q |
93 |
tgtttttctagatgttattgctcgatgcattcaggcttcaaaagagtgtcatttagtgtgttatttatatgattaaaaacagacttaccattcttttgtt |
192 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | ||||||| |||||||||||||| ||||||||||||||| |
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| T |
39216699 |
tgtttttctagatattattgctcgatgcattcaggcttcaaaaaagtgtcatttagaatattatttaagtgattaaaaacaga--taccattcttttgtt |
39216602 |
T |
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| Q |
193 |
tggccacagg |
202 |
Q |
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|||||||||| |
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| T |
39216601 |
tggccacagg |
39216592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 39216753 - 39216702
Alignment:
| Q |
9 |
atgttttcctatgatatcctcatttagttcattttttactactattagattt |
60 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
39216753 |
atgttttcctatgctatcctcatttagttcattttttactactatcagattt |
39216702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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