View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2759_high_2 (Length: 409)
Name: NF2759_high_2
Description: NF2759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2759_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 30647555 - 30647173
Alignment:
| Q |
18 |
tatgtcagagacaacatcttattggtgttatagatgcaatcgttttgtaagattaagcagacaggaaaccgtcgtctgtcctgattgcgacggcggtttc |
117 |
Q |
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| T |
30647555 |
tatgtcagagacaacatcttattggtgttatagatgcaatcgttttgtaagattaagcagacaggaaaccgtcgtctgccctgattgcgacggcggtttc |
30647456 |
T |
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| Q |
118 |
ctcgaagaaattgaacaaccgccacaagttgattcccgccgccgacgtttcccagccgccgccatgtacatgatcggtcaacgtccaaattcagatcata |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30647455 |
ctcgaagaaattgaacaacctccacaagttgattcccgccgccgacgtttcccagccgccgccatgtacatgatcggtcaacgtccaaattcagatcata |
30647356 |
T |
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| Q |
218 |
atcataatagttctcgtccatcttccctccgtagaacccgccgcaacggtggtgaccggtcacctttcaatcctgtcattgtcctccgtggcggtggctc |
317 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30647355 |
atcataatggttctcgtccatctttcctccgtagaacccgccgcaacggtggtgaccggtcacctttcaatccggtcattgtcctccgtggcggtggctc |
30647256 |
T |
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| Q |
318 |
aacagaggcagccacagaagccggtaacaacggtggaggagaaagaggagagagccgtgggtttgagttattttatgatgatg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30647255 |
aacagaggcagccacagaagccggtaacaacggtggaggagaaagaggagagagccgtgggtttgagttattttatgatgatg |
30647173 |
T |
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