View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2759_low_13 (Length: 232)
Name: NF2759_low_13
Description: NF2759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2759_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 43 - 223
Target Start/End: Original strand, 19887878 - 19888058
Alignment:
| Q |
43 |
cattaaggagcggcgtgctaaggaggattttagacgaagttcttcgattttggcgactacgtcaatggagagatgcttggctaggatttcaggtgggaga |
142 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19887878 |
cattaaggagcgccgtgctaaggaggattttagacgaagttcttcgattttggcgactacgtcaatggagagatgcttggctaggatttcaggtgggaga |
19887977 |
T |
|
| Q |
143 |
ccagacttggcaacaaggtgggaacatgttgtccaaagttgtggcatttcttgctttcttgaagctattagtactttcatc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19887978 |
ccagacttggcaacaaggtgggaacatgttgtccaaagttggggcatttcttgctttcttgaagctattagtactttcatc |
19888058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 35319256 - 35319077
Alignment:
| Q |
43 |
cattaaggagcggcgtgctaaggaggattttagacgaagttcttcgattttggcgactacgtcaatggagagatgcttggctaggatttcaggtgggaga |
142 |
Q |
| |
|
||||||||||||||||| |||||||| ||| | ||||| |||||||||||||| | | ||||| | |||||| || || || | ||| || || ||| |
|
|
| T |
35319256 |
cattaaggagcggcgtgataaggaggttttgatgcgaagctcttcgattttggctatgatatcaatagggagatgttttgcaagtacttctggaggaaga |
35319157 |
T |
|
| Q |
143 |
ccagacttggcaacaaggtgggaacatgttgtccaaagttgtggcatttcttgctttcttgaagctattagtactttcat |
222 |
Q |
| |
|
|| || || || ||||||||||||||||| ||||| || || |||| ||||| |||||||| |||| || |||||||| |
|
|
| T |
35319156 |
cctgattttgctacaaggtgggaacatgtggtccatagctggtgcatgtcttgttttcttgatgctaggagcactttcat |
35319077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University