View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2759_low_16 (Length: 215)
Name: NF2759_low_16
Description: NF2759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2759_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 45012472 - 45012291
Alignment:
| Q |
18 |
ccaccaagttccacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgacatt |
117 |
Q |
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| T |
45012472 |
ccaccaagtctcacagtgcaccaaataccacagcattccagcagtaatattctctacggcaggatacactggaaaccatttccatgaattcagtgacatt |
45012373 |
T |
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| Q |
118 |
atcattccactgtttttgacgtgcagaaaatttaatggacaagtgcaacttatcataactgataacaagtcttggtggattt |
199 |
Q |
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| T |
45012372 |
gtcattccactgtttttgacttgtagacaatttaatggacaagtacagcttatcataactgataagaagtcttggtggattt |
45012291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 45018645 - 45018761
Alignment:
| Q |
15 |
ccaccaccaagttccacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgac |
114 |
Q |
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| T |
45018645 |
ccaccaccaagttccacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgac |
45018744 |
T |
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| Q |
115 |
attatcattccactgtt |
131 |
Q |
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| T |
45018745 |
attatcattccactgtt |
45018761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 29 - 199
Target Start/End: Complemental strand, 3173006 - 3172836
Alignment:
| Q |
29 |
cacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgacattatcattccact |
128 |
Q |
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| T |
3173006 |
cacagtgcaccaaatatcacagcattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgatattgtcattccact |
3172907 |
T |
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| Q |
129 |
gtttttgacgtgcagaaaatttaatggacaagtgcaacttatcataactgataacaagtcttggtggattt |
199 |
Q |
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| T |
3172906 |
gtttttgacttgtagactatttaatggacaagtacagcttatcataactgataagaagtcttggtggattt |
3172836 |
T |
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