View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2759_low_5 (Length: 301)
Name: NF2759_low_5
Description: NF2759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2759_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 46853228 - 46853520
Alignment:
| Q |
1 |
tcaaaagtagtcagtaataaggcaagcaacaaaccatgaggagcaggaaaaaacacaatgcaggaacacaaaacaaggcattgtgtgacatggctttgca |
100 |
Q |
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| T |
46853228 |
tcaaaagtagtcagtaataaggcaagcaacaaaccatgacgagcaggaaaaaacacaatgcaggaacacaaaacaaggcattgtgtgacatggctttgca |
46853327 |
T |
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| Q |
101 |
taagacaaaattattgtgtgacatatgg-nnnnnnnncctataatataagaccatgattagagc--------aaactccaagagttaatgtgatacatag |
191 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46853328 |
taagacaaaattattgtgtgacatatggtttttttttcctataatataagaccatgattagagctaactcttgaactccaagagttaatgtgatacatag |
46853427 |
T |
|
| Q |
192 |
acttctcgggtaaaaggatagggaaaactacactgaattggataagagaaattaaaggggagactctaaagtccagaaatttggtgtgtatct |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46853428 |
acttctcgggtaaaaggatagggaaaactacactgaattggataagagaaattaaaggggagactctaaagtccagaaatttggtgtgtatct |
46853520 |
T |
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