View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2759_low_7 (Length: 291)
Name: NF2759_low_7
Description: NF2759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2759_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 48018330 - 48018044
Alignment:
| Q |
1 |
aactggatgctacaaccttctttgtgctggttttgttcaaacaaatagcaagatagccattggagcttccatttctcctctctcttcttataatgccaag |
100 |
Q |
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| T |
48018330 |
aactggatgctacaaccttctttgtgctggttttgttcaaacaaatagcaagatagccattggagcttccatttctcctctctcttcttataatgccaag |
48018231 |
T |
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| Q |
101 |
caatttgacatcaccatactcatctggaaggtttatttctcatacatacaattttactatatacattctcattgtaaaaataatat------------at |
188 |
Q |
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| T |
48018230 |
caatttgacatcaccatactcatctggaaggtttatttctcatacatacaattttactatatacattttcattgtaaaaataatatatatatatatatat |
48018131 |
T |
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| Q |
189 |
atgtagtatacattgcctaataattgtcaatttaggatccacaacttgggaactggtggatgagatttggtgacggcacattgatag |
275 |
Q |
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| T |
48018130 |
atgtagtatacattgcctaataattgtcaatttaggatccacaacttgggaactggtggatgagatttggtgacggcacattgatag |
48018044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 35409223 - 35409350
Alignment:
| Q |
5 |
ggatgctacaaccttctttgtgctggttttgttcaaacaaatagcaagatagccattggagcttccatttctcctctctcttcttataatgccaagcaat |
104 |
Q |
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||||| ||||| |||||||||||||||||| ||||||||||||| || ||||| ||||||||| |||| |||||| |||||||||||| || ||| |||| |
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| T |
35409223 |
ggatgttacaatcttctttgtgctggttttattcaaacaaatagtaaaatagctattggagctgccatatctcctgtctcttcttatactggcaaccaat |
35409322 |
T |
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| Q |
105 |
ttgacatcaccatactcatctggaaggt |
132 |
Q |
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|||||| | || ||||| |||||||| |
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| T |
35409323 |
atgacatttcaatcctcatttggaaggt |
35409350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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