View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2760_low_3 (Length: 287)

Name: NF2760_low_3
Description: NF2760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2760_low_3
NF2760_low_3
[»] chr1 (31 HSPs)
chr1 (1-270)||(40394711-40394980)
chr1 (194-271)||(7218092-7218170)
chr1 (194-267)||(25479559-25479633)
chr1 (194-271)||(33723400-33723478)
chr1 (228-271)||(15361687-15361730)
chr1 (228-271)||(25006087-25006130)
chr1 (228-271)||(49517044-49517087)
chr1 (233-271)||(17628573-17628611)
chr1 (193-269)||(25005814-25005891)
chr1 (198-266)||(44422678-44422747)
chr1 (194-269)||(7472287-7472363)
chr1 (228-268)||(33527200-33527240)
chr1 (228-271)||(17269224-17269267)
chr1 (228-271)||(27738233-27738276)
chr1 (228-271)||(30371122-30371165)
chr1 (228-271)||(37272639-37272682)
chr1 (220-271)||(40304099-40304150)
chr1 (194-271)||(10199426-10199504)
chr1 (194-271)||(36151523-36151601)
chr1 (194-271)||(49373704-49373782)
chr1 (194-271)||(28467326-28467403)
chr1 (233-262)||(29666367-29666396)
chr1 (198-258)||(37241844-37241905)
chr1 (238-271)||(47877096-47877129)
chr1 (194-265)||(6279379-6279451)
chr1 (194-269)||(6659490-6659566)
chr1 (193-252)||(7137015-7137075)
chr1 (194-265)||(12564892-12564964)
chr1 (194-265)||(33722419-33722491)
chr1 (193-225)||(33975591-33975623)
chr1 (228-264)||(47413337-47413373)
[»] chr6 (16 HSPs)
chr6 (194-270)||(31671092-31671169)
chr6 (194-271)||(281866-281944)
chr6 (193-271)||(4006688-4006767)
chr6 (229-271)||(5550106-5550148)
chr6 (228-271)||(29274282-29274325)
chr6 (194-271)||(9093574-9093652)
chr6 (228-271)||(5623130-5623173)
chr6 (228-271)||(22742340-22742383)
chr6 (193-270)||(725672-725750)
chr6 (194-267)||(32386581-32386655)
chr6 (228-270)||(33787798-33787840)
chr6 (194-270)||(2117378-2117455)
chr6 (228-269)||(14492278-14492319)
chr6 (239-271)||(3287853-3287885)
chr6 (228-260)||(4246395-4246427)
chr6 (193-268)||(25100020-25100096)
[»] chr2 (27 HSPs)
chr2 (197-271)||(33256714-33256789)
chr2 (194-270)||(22681203-22681280)
chr2 (194-264)||(9395111-9395182)
chr2 (194-271)||(33942124-33942202)
chr2 (193-257)||(9174803-9174868)
chr2 (228-271)||(11513872-11513915)
chr2 (228-271)||(18066102-18066145)
chr2 (194-271)||(29633046-29633125)
chr2 (195-271)||(9556213-9556290)
chr2 (194-258)||(41950054-41950119)
chr2 (228-264)||(25800810-25800846)
chr2 (228-271)||(28039385-28039428)
chr2 (228-271)||(35755555-35755598)
chr2 (228-271)||(43141845-43141888)
chr2 (229-271)||(3235438-3235479)
chr2 (201-246)||(10884546-10884592)
chr2 (193-258)||(18179257-18179323)
chr2 (193-258)||(39983329-39983395)
chr2 (193-258)||(43985020-43985086)
chr2 (240-269)||(6926507-6926536)
chr2 (194-270)||(26626848-26626925)
chr2 (230-271)||(33944579-33944620)
chr2 (228-261)||(42592323-42592356)
chr2 (199-270)||(1899916-1899988)
chr2 (192-267)||(6993740-6993816)
chr2 (228-264)||(7937002-7937038)
chr2 (202-269)||(13736319-13736387)
[»] chr7 (28 HSPs)
chr7 (191-271)||(21453268-21453349)
chr7 (194-270)||(38010689-38010766)
chr7 (228-269)||(25296960-25297001)
chr7 (210-269)||(28340878-28340938)
chr7 (228-271)||(9527143-9527186)
chr7 (194-260)||(27378846-27378913)
chr7 (202-271)||(17989049-17989119)
chr7 (194-271)||(31338482-31338560)
chr7 (203-270)||(1350269-1350337)
chr7 (228-271)||(1417238-1417281)
chr7 (228-271)||(5369744-5369787)
chr7 (228-271)||(12110334-12110377)
chr7 (228-271)||(24909638-24909681)
chr7 (228-271)||(27548237-27548280)
chr7 (231-270)||(47177611-47177650)
chr7 (194-271)||(3500985-3501062)
chr7 (233-271)||(3802197-3802235)
chr7 (194-259)||(4966142-4966208)
chr7 (194-271)||(22283762-22283840)
chr7 (202-271)||(30456476-30456546)
chr7 (194-264)||(30837410-30837479)
chr7 (194-271)||(40689004-40689082)
chr7 (194-271)||(44821933-44822011)
chr7 (232-269)||(45777228-45777265)
chr7 (193-252)||(2825248-2825308)
chr7 (194-269)||(20881654-20881730)
chr7 (231-271)||(24895330-24895370)
chr7 (231-271)||(45813236-45813276)
[»] chr5 (32 HSPs)
chr5 (194-269)||(10272449-10272525)
chr5 (226-271)||(32059640-32059685)
chr5 (193-261)||(31688024-31688092)
chr5 (194-271)||(17258901-17258979)
chr5 (194-271)||(28586784-28586862)
chr5 (195-271)||(41016153-41016230)
chr5 (194-266)||(16328845-16328917)
chr5 (194-269)||(41957469-41957545)
chr5 (228-271)||(9202801-9202844)
chr5 (228-271)||(12595793-12595836)
chr5 (228-271)||(12975321-12975364)
chr5 (194-260)||(13604867-13604934)
chr5 (232-271)||(14295480-14295519)
chr5 (194-264)||(16945001-16945072)
chr5 (228-271)||(18857453-18857496)
chr5 (191-269)||(32172629-32172708)
chr5 (228-271)||(38047908-38047951)
chr5 (196-245)||(3237093-3237143)
chr5 (194-271)||(8985635-8985713)
chr5 (194-271)||(12425545-12425623)
chr5 (228-270)||(13244535-13244577)
chr5 (190-271)||(31030144-31030226)
chr5 (195-271)||(7319380-7319457)
chr5 (226-263)||(35550930-35550967)
chr5 (193-269)||(39105440-39105517)
chr5 (228-260)||(2569748-2569780)
chr5 (233-269)||(11473136-11473172)
chr5 (194-245)||(11707055-11707107)
chr5 (194-269)||(16889711-16889787)
chr5 (228-260)||(19369298-19369330)
chr5 (228-260)||(21768250-21768282)
chr5 (228-271)||(26209466-26209510)
[»] scaffold0024 (1 HSPs)
scaffold0024 (228-271)||(27550-27593)
[»] chr8 (31 HSPs)
chr8 (193-270)||(8062499-8062577)
chr8 (228-269)||(12361168-12361209)
chr8 (193-269)||(30013194-30013271)
chr8 (193-271)||(6509320-6509399)
chr8 (194-268)||(7645955-7646030)
chr8 (228-270)||(10076329-10076371)
chr8 (194-271)||(26284813-26284891)
chr8 (194-271)||(31862467-31862545)
chr8 (228-270)||(43704431-43704473)
chr8 (226-271)||(1470907-1470952)
chr8 (193-245)||(8060669-8060722)
chr8 (199-271)||(10075574-10075647)
chr8 (228-271)||(787159-787202)
chr8 (197-271)||(11415128-11415203)
chr8 (194-252)||(13459638-13459697)
chr8 (228-271)||(34770866-34770909)
chr8 (228-266)||(1640404-1640442)
chr8 (202-271)||(4558772-4558842)
chr8 (237-271)||(7878548-7878582)
chr8 (229-267)||(9699979-9700017)
chr8 (193-246)||(27028830-27028884)
chr8 (193-271)||(29699228-29699305)
chr8 (233-271)||(45071176-45071214)
chr8 (228-265)||(9834842-9834879)
chr8 (194-262)||(30389082-30389151)
chr8 (228-268)||(2107382-2107422)
chr8 (231-271)||(13561368-13561408)
chr8 (194-245)||(30277263-30277315)
chr8 (194-257)||(31705073-31705137)
chr8 (228-268)||(38874623-38874663)
chr8 (228-268)||(41336698-41336738)
[»] chr4 (26 HSPs)
chr4 (194-271)||(49219113-49219191)
chr4 (196-258)||(2900327-2900390)
chr4 (228-271)||(6927546-6927589)
chr4 (228-271)||(8130148-8130191)
chr4 (228-271)||(24091437-24091480)
chr4 (228-271)||(40174537-40174580)
chr4 (232-271)||(42321936-42321975)
chr4 (228-271)||(53626750-53626793)
chr4 (194-270)||(6978980-6979055)
chr4 (194-271)||(10192258-10192335)
chr4 (194-271)||(24929467-24929545)
chr4 (229-258)||(10365759-10365788)
chr4 (234-271)||(13949903-13949940)
chr4 (238-271)||(21952935-21952968)
chr4 (194-266)||(30207589-30207662)
chr4 (228-269)||(41097296-41097337)
chr4 (194-266)||(45128328-45128401)
chr4 (194-269)||(7694028-7694104)
chr4 (204-271)||(18630654-18630722)
chr4 (193-252)||(35507474-35507534)
chr4 (195-262)||(35571650-35571718)
chr4 (197-260)||(36048518-36048582)
chr4 (228-260)||(36460571-36460603)
chr4 (194-245)||(47800623-47800675)
chr4 (231-271)||(54325093-54325133)
chr4 (103-175)||(55870262-55870334)
[»] chr3 (22 HSPs)
chr3 (194-266)||(33306741-33306814)
chr3 (196-271)||(23315600-23315676)
chr3 (194-260)||(20502086-20502153)
chr3 (228-263)||(20874357-20874392)
chr3 (228-271)||(36783387-36783430)
chr3 (194-271)||(24887301-24887379)
chr3 (194-271)||(25453877-25453955)
chr3 (194-271)||(38462255-38462333)
chr3 (230-270)||(2201103-2201143)
chr3 (194-269)||(45432957-45433033)
chr3 (232-271)||(3467445-3467484)
chr3 (228-271)||(33405220-33405263)
chr3 (193-271)||(52618977-52619056)
chr3 (228-266)||(2318623-2318661)
chr3 (194-271)||(21367641-21367719)
chr3 (194-271)||(32064414-32064491)
chr3 (228-270)||(33674710-33674752)
chr3 (194-269)||(1217818-1217894)
chr3 (234-270)||(2865718-2865754)
chr3 (194-261)||(22214677-22214745)
chr3 (194-249)||(34924556-34924612)
chr3 (201-252)||(47319296-47319348)
[»] scaffold0044 (1 HSPs)
scaffold0044 (230-271)||(52005-52046)
[»] scaffold0110 (1 HSPs)
scaffold0110 (228-271)||(4276-4319)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 40394711 - 40394980
Alignment:
Q  1 attattaatcacaacaaagaacaataccccaaataattacaaagcatgaaaataaaggtcttagattaaggaagtggctgcaagaaacgaagatcggcgt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  40394711 attattaatcacaaaaaagaacaataccccaaataattacaaagcatgaaaataaaggtcttagattaaggaagtggctgcaagaaacgaagattggtgt 40394810  T
Q  101 tcgtttgaattgacttgtttaaatttatctaatgaaataatcatttgcgagactgtttgagatagtttataaaaatatgacatgtcggatccattttcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40394811 tcgtttgaattgacttgtttaaatttatctaatgaaataatcatttgcgagactgtttgagatagtttataaaaatatgacatgtcggatccattttcag 40394910  T
Q  201 cttattttcataagctctataggatggttatgaaaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||    
T  40394911 cttattttcataagctctataggatggttatgaaaacaacttataatttatatgaaaacaatttaacttt 40394980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 7218092 - 7218170
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||| |||||||||||||| |||  ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  7218092 ttttcaacttattttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaaacaatttgacttta 7218170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 25479633 - 25479559
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaacaatttgac 267  Q
    ||||||||||||||||||||||||| |||||| | ||||||||||| |||||||  |||||||| ||||||||||    
T  25479633 ttttcagcttattttcataagctctctaggatagcttatgaaaacaacttatagcctatatgaagacaatttgac 25479559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 33723400 - 33723478
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||| |||||||| || ||| | | |||||||||||| | |||||||||||||||||||||||||||||    
T  33723400 ttttcagcttatttccataagctttacagggtagcttatgaaaacagttcatagtttatatgaaaacaatttgacttta 33723478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 15361730 - 15361687
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||    
T  15361730 ttatgaaaacagcttatagcttatatgaaaataatttgacttta 15361687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 25006087 - 25006130
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||    
T  25006087 ttatgaaaacaacttatagcttatatgaaaacaatttgacttta 25006130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 49517087 - 49517044
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||    
T  49517087 ttatgaaaacagcttatagcttaaatgaaaacaatttgacttta 49517044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 17628611 - 17628573
Alignment:
Q  233 aaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  17628611 aaaacagcttataatttatatgaaaacaatttgacttta 17628573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 25005814 - 25005891
Alignment:
Q  193 attttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    ||||| ||||| |||| |||||||||  ||||| | ||||||||||| ||||||| |||||||||||||| |||||||    
T  25005814 attttaagcttgtttttataagctctccaggatagcttatgaaaacaacttatagcttatatgaaaacaagttgactt 25005891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 44422747 - 44422678
Alignment:
Q  198 cagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttga 266  Q
    |||||||||||||||||||||  ||||| | |||| |||| ||||||||| ||||||||||||| |||||    
T  44422747 cagcttattttcataagctctccaggatagcttataaaaatagcttatagcttatatgaaaacagtttga 44422678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 7472363 - 7472287
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    |||||||||||||||||||||||||  | ||| | ||||| ||||||||||||| |||||  |||||||||| ||||    
T  7472363 ttttcagcttattttcataagctctccaagatagcttatggaaacagcttatagattatacaaaaacaatttaactt 7472287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 33527200 - 33527240
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgact 268  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  33527200 ttatgaaaacagcttatagattatatgaaaacagtttgact 33527240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 17269267 - 17269224
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||| ||||| | ||||||||||||||||||||||||    
T  17269267 ttatgaaaacaacttattgcttatatgaaaacaatttgacttta 17269224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 27738233 - 27738276
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||  |||||| ||||||||||||||||||||||||    
T  27738233 ttatgaaaacaaattatagcttatatgaaaacaatttgacttta 27738276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 30371165 - 30371122
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||||    
T  30371165 ttatgaaaacaacttatagcttatatgaaaacaatttgagttta 30371122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 37272639 - 37272682
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||| |||||||||||||  |||||||||    
T  37272639 ttatgaaaacagcttatagcttatatgaaaacagattgacttta 37272682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 40304099 - 40304150
Alignment:
Q  220 taggatggttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||| |||||||||||||||||||  ||||||||||||||| ||| ||||    
T  40304099 taggatagttatgaaaacagcttataacttatatgaaaacaatgtgatttta 40304150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 10199426 - 10199504
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||||||||| ||  || | ||||||||| ||||||| | ||||| ||||| | ||||||||||    
T  10199426 ttttcagcttattttcataagctctctaaaatagcttatgaaaaaagcttatcgattatacgaaaatagtttgacttta 10199504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 36151523 - 36151601
Alignment:
Q  194 ttttcagcttattttcataagctctatagga-tggttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||| |||||||||||||||||  ||||| || ||| |||||||  |||||  ||||| ||||||||||||||||||    
T  36151523 ttttcaacttattttcataagctcactaggattgtttacgaaaacaatttataacttatacgaaaacaatttgacttta 36151601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 49373704 - 49373782
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||||||||||| ||||   ||||||| | || ||||||  ||| |||| ||||||||||||||    
T  49373704 ttttcagcttattttcataagctctattggataacttatgaacataggttataggctatgtgaatacaatttgacttta 49373782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 28467326 - 28467403
Alignment:
Q  194 ttttcagcttattttcataagctctataggatggttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||| |||  ||||||||| |||   | ||||||||||| ||| ||| ||||||||||| ||||||||||||    
T  28467326 ttttcagcttttttcaataagctctctagctagcttatgaaaacaacttgtagcttatatgaaaataatttgacttta 28467403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 29666367 - 29666396
Alignment:
Q  233 aaaacagcttatagtttatatgaaaacaat 262  Q
    ||||||||||||||||||||||||||||||    
T  29666367 aaaacagcttatagtttatatgaaaacaat 29666396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 37241844 - 37241905
Alignment:
Q  198 cagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaa 258  Q
    ||||||||||||||||||||| ||||||   ||||||||||| ||| ||| |||||||||||    
T  37241844 cagcttattttcataagctctctaggatatcttatgaaaacaacttctagcttatatgaaaa 37241905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 47877129 - 47877096
Alignment:
Q  238 agcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||||||||||||| ||||    
T  47877129 agcttatagtttatatgaaaacaatttgatttta 47877096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 6279451 - 6279379
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttg 265  Q
    |||||||| ||||| |||||||||| |||||| | ||||||||| || ||| || ||||| ||||||||||||    
T  6279451 ttttcagcgtatttccataagctctctaggatagcttatgaaaatagtttaaagcttatacgaaaacaatttg 6279379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 6659566 - 6659490
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    ||||||||||||||  ||||||||| | || | | ||||||||||| ||||||| |||||||||| | |||||||||    
T  6659566 ttttcagcttatttcgataagctctcttggttagcttatgaaaacatcttatagcttatatgaaagccatttgactt 6659490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 7137015 - 7137075
Alignment:
Q  193 attttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttata 252  Q
    |||||||||||||||||||||| |||  | ||| | ||||||||||||||||||| |||||    
T  7137015 attttcagcttattttcataagttctccaagatagcttatgaaaacagcttatagattata 7137075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 12564892 - 12564964
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttg 265  Q
    |||||||||||||| | ||||| ||| | ||| | ||||||||||| ||||||| ||||||||||||| ||||    
T  12564892 ttttcagcttatttccgtaagcactaaaagatagcttatgaaaacaacttatagcttatatgaaaacagtttg 12564964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 33722419 - 33722491
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaacaatttg 265  Q
    |||||||||||||| ||||| |||| ||||||   ||||||||| ||||| |||| |||||||| ||||||||    
T  33722419 ttttcagcttatttccataacctctgtaggataacttatgaaaaaagcttgtagtatatatgaacacaatttg 33722491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 33975623 - 33975591
Alignment:
Q  193 attttcagcttattttcataagctctataggat 225  Q
    |||||||||||||||||||||||||| ||||||    
T  33975623 attttcagcttattttcataagctctctaggat 33975591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 47413337 - 47413373
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaattt 264  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  47413337 ttatgaaaacatcttacagtttatatgaaaacaattt 47413373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 31671092 - 31671169
Alignment:
Q  194 ttttcagcttattttcataagctctataggatggtt-atgaaaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    ||||||||||||||||||||||| | |||||| ||| | ||||||||||||||| ||||||||||||||||| |||||    
T  31671092 ttttcagcttattttcataagctatctaggatagtttacgaaaacagcttatagcttatatgaaaacaatttaacttt 31671169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 281866 - 281944
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||| ||| |||||| |||||| | ||||||| ||||||||||| |||||||||||||| |||||||||    
T  281866 ttttcagcttatttccatgagctctctaggatagcttatgaacacagcttatagcttatatgaaaacaagttgacttta 281944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 271
Target Start/End: Complemental strand, 4006767 - 4006688
Alignment:
Q  193 attttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||||| ||||   |||| | ||||||||||| ||||||| |||||| |||||||||||||||||    
T  4006767 attttcagcttattttcataacctctcagggatagcttatgaaaacaacttatagcttatataaaaacaatttgacttta 4006688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 5550148 - 5550106
Alignment:
Q  229 tatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  5550148 tatgaaaacagcttatagcttatatgaaaacaatttgacttta 5550106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 29274282 - 29274325
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||| |||||| ||||||||||||||||||||||||    
T  29274282 ttatgaaaacagtttatagcttatatgaaaacaatttgacttta 29274325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 9093574 - 9093652
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||||| |||| ||| || ||  | ||||||||||||||||||| ||||| ||||||||||| ||||||    
T  9093574 ttttcagcttattttcttaagttctctaagacagcttatgaaaacagcttatagcttatacgaaaacaatttaacttta 9093652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 5623173 - 5623130
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||    
T  5623173 ttatgaaaacaacttatagtttatatgaaaactatttggcttta 5623130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 22742383 - 22742340
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||| |||| ||||||||| ||||||||||||||||||||||||    
T  22742383 ttataaaaatagcttatagcttatatgaaaacaatttgacttta 22742340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 270
Target Start/End: Original strand, 725672 - 725750
Alignment:
Q  193 attttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    ||||||||||||||| |||||||||| | | || |||||  |||||| | |||||||||||| |||||| |||||||||    
T  725672 attttcagcttatttccataagctctttcgaataggttacaaaaacaacatatagtttatataaaaacagtttgacttt 725750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 32386581 - 32386655
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaacaatttgac 267  Q
    |||||||||||||||||||||||||  |||||   | ||||||||| | ||||  ||||||||||||||||||||    
T  32386581 ttttcagcttattttcataagctctccaggataactaatgaaaacaacgtataccttatatgaaaacaatttgac 32386655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 33787798 - 33787840
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    ||||||||||||||||||  |||||||||| ||||||||||||    
T  33787798 ttatgaaaacagcttataacttatatgaaatcaatttgacttt 33787840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 2117455 - 2117378
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    |||| |||||||||  ||||||||| ||||||   ||||||||||| ||||||| ||||||||||| | |||||||||    
T  2117455 tttttagcttatttcaataagctctctaggataacttatgaaaacaacttatagattatatgaaaatagtttgacttt 2117378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 14492319 - 14492278
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    ||||||||||||||||||| || ||| |||||||||||||||    
T  14492319 ttatgaaaacagcttatagcttgtatcaaaacaatttgactt 14492278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 3287885 - 3287853
Alignment:
Q  239 gcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||| ||||||||||||||||||||||||    
T  3287885 gcttatagcttatatgaaaacaatttgacttta 3287853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 4246427 - 4246395
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaaca 260  Q
    ||||||||||||||||||| |||||||||||||    
T  4246427 ttatgaaaacagcttatagattatatgaaaaca 4246395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 25100096 - 25100020
Alignment:
Q  193 attttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgact 268  Q
    ||||||| |||||||  ||||||||| || ||| | ||||||||||| ||||||  || ||||||||||||||||||    
T  25100096 attttcaacttatttctataagctctttaagatagcttatgaaaacaacttataacttctatgaaaacaatttgact 25100020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 33256789 - 33256714
Alignment:
Q  197 tcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||||| | |||  ||||||| |||||||||| |||||||||||||||||||||| ||||||||||    
T  33256789 tcagcttattttcatacggtcttcaggatggcttatgaaaactgcttatagtttatatgaaaacagtttgacttta 33256714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 22681203 - 22681280
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    |||| ||||||||| |||||| ||| |||||| | ||||||||||||||||||| |||||||||||||||||| ||||    
T  22681203 tttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaatttggcttt 22681280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 9395182 - 9395111
Alignment:
Q  194 ttttcagcttattttcataagctctataggatggtta-tgaaaacagcttatagtttatatgaaaacaattt 264  Q
    |||||||||||||||||||||||||| || ||   || |||||||||||||||| |||||||||||||||||    
T  9395182 ttttcagcttattttcataagctctacagaataactaatgaaaacagcttatagattatatgaaaacaattt 9395111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 33942202 - 33942124
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||| |||||||| |||||| || ||||| ||||||||||| ||||||| ||| ||||||||| ||||||||||    
T  33942202 ttttcagctaattttcattagctctctatgatggcttatgaaaacaacttatagcttacatgaaaacagtttgacttta 33942124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 9174868 - 9174803
Alignment:
Q  193 attttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaa 257  Q
    |||||||||||||||||||||||||| || ||| | ||||||||||||||||||||  ||||||||    
T  9174868 attttcagcttattttcataagctctgtaagatagcttatgaaaacagcttatagtaaatatgaaa 9174803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 11513915 - 11513872
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||    
T  11513915 ttatgaaaacaacttatagcttatatgaaaacaatttgacttta 11513872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 18066145 - 18066102
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||    
T  18066145 ttatgaaaacagcttatagcttatatgaaaacaatttaacttta 18066102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 29633125 - 29633046
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttat-atgaaaacaatttgacttta 271  Q
    |||||||| |||||| ||||||| | |||||| | ||||||||| ||||||||||| || ||||||||||||||||||||    
T  29633125 ttttcagcatattttgataagctatttaggatagcttatgaaaagagcttatagttaattatgaaaacaatttgacttta 29633046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 9556290 - 9556213
Alignment:
Q  195 tttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||| |||||||||||||||| | |||||| | |||||||||||| |||||| || ||||||||||  |||||||||    
T  9556290 tttcaacttattttcataagctttctaggatagcttatgaaaacagtttatagcttgtatgaaaacacgttgacttta 9556213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 41950119 - 41950054
Alignment:
Q  194 ttttcagcttattttcataagctctataggatggt-tatgaaaacagcttatagtttatatgaaaa 258  Q
    |||| ||||||||||||||||||||||||||| ||  ||| ||||||  |||||||||||||||||    
T  41950119 ttttaagcttattttcataagctctataggatagtgaatgtaaacaggatatagtttatatgaaaa 41950054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 25800846 - 25800810
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaattt 264  Q
    ||||||||||||||||||| |||||||||||||||||    
T  25800846 ttatgaaaacagcttatagcttatatgaaaacaattt 25800810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 28039385 - 28039428
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||  ||||||||||||||||||||||||| |||||||    
T  28039385 ttatgaaaattgcttatagtttatatgaaaacaattggacttta 28039428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 35755555 - 35755598
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||||    
T  35755555 ttatgaaaacaacttatagcttacatgaaaacaatttgacttta 35755598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 43141888 - 43141845
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||    
T  43141888 ttatgaaaacatcttatagcttatatggaaacaatttgacttta 43141845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 3235438 - 3235479
Alignment:
Q  229 tatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  3235438 tatgaaaacagcttatagtttatatg-aaacagtttgacttta 3235479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 10884546 - 10884592
Alignment:
Q  201 cttattttcataagctctataggat-ggttatgaaaacagcttatag 246  Q
    |||||||||||||||||| |||||| | |||||||||||||||||||    
T  10884546 cttattttcataagctctctaggatagcttatgaaaacagcttatag 10884592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 18179257 - 18179323
Alignment:
Q  193 attttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaa 258  Q
    ||||||||||||||||| |||| |||  ||||| | |||||||| |||||||||| |||||||||||    
T  18179257 attttcagcttattttcgtaagttctccaggatagcttatgaaagcagcttatagcttatatgaaaa 18179323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 39983395 - 39983329
Alignment:
Q  193 attttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaa 258  Q
    |||||||| |||||||||| ||||||  ||||| | ||||||||||| ||||||| |||||||||||    
T  39983395 attttcagtttattttcattagctctccaggatagcttatgaaaacaacttatagcttatatgaaaa 39983329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 43985020 - 43985086
Alignment:
Q  193 attttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaa 258  Q
    ||||||||||||||||||||||||||  | ||| | ||||||||||| |||||| |||||| |||||    
T  43985020 attttcagcttattttcataagctcttcaagatagcttatgaaaacaacttataatttatacgaaaa 43985086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 269
Target Start/End: Original strand, 6926507 - 6926536
Alignment:
Q  240 cttatagtttatatgaaaacaatttgactt 269  Q
    ||||||||||||||||||||||||||||||    
T  6926507 cttatagtttatatgaaaacaatttgactt 6926536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 26626925 - 26626848
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    ||||||| ||||||||||||| |||  | ||| | ||||||||||||||| ||| ||||| ||||||||||| |||||    
T  26626925 ttttcaggttattttcataagttctgcaagatagcttatgaaaacagcttctagcttatacgaaaacaatttaacttt 26626848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 33944620 - 33944579
Alignment:
Q  230 atgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||  |||||| ||||||||||||||||||||||||    
T  33944620 atgaaaacaatttatagcttatatgaaaacaatttgacttta 33944579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 261
Target Start/End: Complemental strand, 42592356 - 42592323
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaa 261  Q
    ||||||||||||||||||| ||||||||||||||    
T  42592356 ttatgaaaacagcttatagcttatatgaaaacaa 42592323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 1899988 - 1899916
Alignment:
Q  199 agcttattttcataagctctataggatggtt-atgaaaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    |||||||||| |||| |||| ||| || ||| |||||||||  |||||| ||||| |||||||||||||||||    
T  1899988 agcttatttttataaactctttagaatagtttatgaaaacattttatagcttatacgaaaacaatttgacttt 1899916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 6993740 - 6993816
Alignment:
Q  192 cattttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaacaatttgac 267  Q
    |||||| ||||||||||||||||||||  || || | ||||||||||| | ||||| ||||||||| | ||||||||    
T  6993740 catttttagcttattttcataagctctcaagcatagcttatgaaaacaacctatagcttatatgaatataatttgac 6993816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 7937038 - 7937002
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaattt 264  Q
    |||||||||||||||||| | ||||||||||||||||    
T  7937038 ttatgaaaacagcttataatctatatgaaaacaattt 7937002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 13736319 - 13736387
Alignment:
Q  202 ttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    ||||||||||||||||| ||| || | ||||||||||||||||||| | || |||||| | ||||||||    
T  13736319 ttattttcataagctctctagtatagcttatgaaaacagcttatagctgatgtgaaaatagtttgactt 13736387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 191 - 271
Target Start/End: Complemental strand, 21453349 - 21453268
Alignment:
Q  191 ccattttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||| ||||| |||||| |||||| | |||||||||||| |||||| |||||||| ||||| |||||||||    
T  21453349 ccattttcagcttatcttcattagctctctaggatagcttatgaaaacagtttatagcttatatgagaacaacttgacttta 21453268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 38010766 - 38010689
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    |||| ||||||||| |||||| ||| |||||| | ||||||||||||||||||| |||||||||||||||||| ||||    
T  38010766 tttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaatttggcttt 38010689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 25297001 - 25296960
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  25297001 ttatgaaaacagcttatagtttatatgaaaacaatttaactt 25296960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 28340878 - 28340938
Alignment:
Q  210 ataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    ||||||||| |||||| | ||||||||||||||||||| |||||||| |||||||||||||    
T  28340878 ataagctctctaggatagcttatgaaaacagcttatagcttatatgacaacaatttgactt 28340938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 9527143 - 9527186
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||    
T  9527143 ttatgaaaacaacttatagtttatatgaaaacagtttgacttta 9527186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 27378846 - 27378913
Alignment:
Q  194 ttttcagcttattttcataagctctataggatggtt-atgaaaacagcttatagtttatatgaaaaca 260  Q
    ||||||| |||||||||||||||||  ||||| ||| |||||||||| || |||||||||||||||||    
T  27378846 ttttcagtttattttcataagctctccaggatagtttatgaaaacagattgtagtttatatgaaaaca 27378913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 17989049 - 17989119
Alignment:
Q  202 ttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||||||  ||||  | |||||||||||  |||||||||||||||||||| ||||||||||    
T  17989049 ttattttcataagctcttcaggagagcttatgaaaacaaattatagtttatatgaaaacagtttgacttta 17989119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 31338560 - 31338482
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||| ||||||||||||||||| ||||||| | ||||| ||||| ||||||  |||||| |||||| ||||||||||    
T  31338560 ttttcaccttattttcataagctccataggatagtttatggaaacaacttataacttatataaaaacagtttgacttta 31338482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 1350269 - 1350337
Alignment:
Q  203 tattttcataagctctataggatggtt-atgaaaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    ||||||||||||||||  ||||| ||| ||||||||||||||||| |||| |||||| | |||||||||    
T  1350269 tattttcataagctcttcaggatagtttatgaaaacagcttatagattatgtgaaaaaagtttgacttt 1350337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 1417281 - 1417238
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||| ||||| | ||||||||||||||||||||||||    
T  1417281 ttatgaaaacaacttattgcttatatgaaaacaatttgacttta 1417238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 5369744 - 5369787
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||||||||  |||||||||||| ||||||||||    
T  5369744 ttatgaaaacagcttatagcatatatgaaaacagtttgacttta 5369787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 12110377 - 12110334
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||| |||||  |||||||||||||||||    
T  12110377 ttatgaaaacagcttatagcttataccaaaacaatttgacttta 12110334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 24909681 - 24909638
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||    
T  24909681 ttatgaaaacaacttatagcttatatgaaaataatttgacttta 24909638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 27548280 - 27548237
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||| ||| |||||||||||| |||||||    
T  27548280 ttatgaaaacagcttatagcttaaatgaaaacaattagacttta 27548237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 270
Target Start/End: Complemental strand, 47177650 - 47177611
Alignment:
Q  231 tgaaaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  47177650 tgaaaacagcttatagcttatatgaaaacaatttaacttt 47177611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 3500985 - 3501062
Alignment:
Q  194 ttttcagcttattttcataagctctataggatggtta-tgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||| |||| ||| |||||||| |||| |||| ||| |||||| ||||||||||||  |||||||||||    
T  3500985 ttttcagcttatttccatacgct-tataggatagttaatgaatacaacttatattttatatgaaaatgatttgacttta 3501062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 3802197 - 3802235
Alignment:
Q  233 aaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  3802197 aaaacagcttataatttatatgaaaacgatttgacttta 3802235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 4966208 - 4966142
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaac 259  Q
    ||||||| |||||| ||||||||||  ||||||| ||||||||||||||||||  | ||||||||||    
T  4966208 ttttcagtttatttccataagctcttcaggatggcttatgaaaacagcttatacctaatatgaaaac 4966142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 22283762 - 22283840
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||| |||||| ||| || ||||| |||||||||||| |||||| | |||  |||||||||| ||||||    
T  22283762 ttttcagcttatttccataagttctctaagatggtttatgaaaacagtttatagctgatacaaaaacaatttaacttta 22283840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 30456476 - 30456546
Alignment:
Q  202 ttattttcataagctctataggatggtt-atgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||||||  | ||| ||| ||||||||  ||||||  ||||||||||||||||||||||||    
T  30456476 ttattttcataagctctccaagatagtttatgaaaaccacttataacttatatgaaaacaatttgacttta 30456546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 30837479 - 30837410
Alignment:
Q  194 ttttcagcttattttcataagctctataggatggttatgaaaacagcttatagtttatatgaaaacaattt 264  Q
    |||||||||| ||||||||| |||| |||||||| | | ||||||||||| || | |||||||||||||||    
T  30837479 ttttcagctttttttcataatctctgtaggatggct-taaaaacagcttaaagctgatatgaaaacaattt 30837410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 40689004 - 40689082
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||| |||||||||||||||| | |  ||||| | ||||||| ||||||||||| ||||||||||| ||||| ||||||    
T  40689004 ttttgagcttattttcataagttatccaggatagcttatgaacacagcttatagcttatatgaaaataatttaacttta 40689082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 44822011 - 44821933
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||| |||||||||||||| |||  || || | ||||||||||||||||||  |||||  |||||||||||||||||    
T  44822011 ttttcaacttattttcataagttctccagaatagcttatgaaaacagcttataacttatacaaaaacaatttgacttta 44821933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 45777228 - 45777265
Alignment:
Q  232 gaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  45777228 gaaaacaacttatagtttatatgaaaacagtttgactt 45777265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 2825248 - 2825308
Alignment:
Q  193 attttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttata 252  Q
    ||||||||||||||| |||||| ||| |||||| | || |||||||| |||||||||||||    
T  2825248 attttcagcttatttccataagttctctaggatagcttgtgaaaacaacttatagtttata 2825308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 20881654 - 20881730
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    ||||||||||||||||||||| ||| || ||| | ||||||||||| ||||||| || || | ||||||||| ||||    
T  20881654 ttttcagcttattttcataagttctttaagatagtttatgaaaacaacttatagcttgtacggaaacaatttaactt 20881730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 24895370 - 24895330
Alignment:
Q  231 tgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||| ||||||| ||||||||||| ||||||||||||    
T  24895370 tgaaaacaacttatagcttatatgaaaataatttgacttta 24895330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 45813236 - 45813276
Alignment:
Q  231 tgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||| ||||||| |||||||||||||| |||||||||    
T  45813236 tgaaaacaacttatagattatatgaaaacaagttgacttta 45813276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 10272449 - 10272525
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    |||||||||||||||||||| ||||  | ||||| ||||||||||| ||||||| ||||| ||||||||||||||||    
T  10272449 ttttcagcttattttcataaactctccaagatggcttatgaaaacaacttatagcttatacgaaaacaatttgactt 10272525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 32059640 - 32059685
Alignment:
Q  226 ggttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  32059640 ggttatgaaaacagcttatagcttatatgaaaacagtttgacttta 32059685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 31688092 - 31688024
Alignment:
Q  193 attttcagcttattttcataagctctataggatggttatgaaaacagcttatagtttatatgaaaacaa 261  Q
    ||||||| ||||||||||||||||||| | ||| | ||||| ||||||||| ||||||||| |||||||    
T  31688092 attttcaacttattttcataagctctacatgatagctatgagaacagcttaaagtttatataaaaacaa 31688024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 17258901 - 17258979
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||||||||||||||  ||||| | ||||||||||||||||| | || || ||||| | ||||||||||    
T  17258901 ttttcagcttattttcataagctcttcaggatagtttatgaaaacagcttattgattgtacgaaaatagtttgacttta 17258979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 28586784 - 28586862
Alignment:
Q  194 ttttcagcttattttcataagctctataggatggtta-tgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||  ||||||||| |||||| | |  | ||||||||||||| |||||||||||||| ||||||||||    
T  28586784 ttttcagcttatttcgataagctctctaggatagctcgtcaaaacagcttataatttatatgaaaacagtttgacttta 28586862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 41016230 - 41016153
Alignment:
Q  195 tttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||||||||||| |  | ||||| || |||||||| ||||||| ||||||||||||| ||||| ||||    
T  41016230 tttcagcttattttcataagctttccatgatggcttgtgaaaacaacttatagcttatatgaaaacagtttgaattta 41016153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 16328917 - 16328845
Alignment:
Q  194 ttttcagcttattttcataagctctataggatggttatgaaaacagcttatagtttatatgaaaacaatttga 266  Q
    |||||||||||||| ||||||||||  |||  | ||| |||||||| ||||| |||||||||||||| |||||    
T  16328917 ttttcagcttatttccataagctctccaggtagcttacgaaaacagtttataatttatatgaaaacagtttga 16328845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 41957469 - 41957545
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    |||||| |||||||||||||| |||  ||||| | ||||||||||||||||||  ||| ||||||||||||| ||||    
T  41957469 ttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttataacttacatgaaaacaatttaactt 41957545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 9202801 - 9202844
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||| | ||||||||||||||||| ||||||    
T  9202801 ttatgaaaacagcttattgcttatatgaaaacaatttaacttta 9202844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 12595793 - 12595836
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||| ||||| |||||||||||||||||||||| ||||||    
T  12595793 ttatgaaaccagctcatagtttatatgaaaacaatttaacttta 12595836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 12975364 - 12975321
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||| ||||||||||| ||||||||||||||||||| ||||    
T  12975364 ttatgaacacagcttatagcttatatgaaaacaatttgatttta 12975321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 13604867 - 13604934
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaaca 260  Q
    |||||| ||||||||||||||||||  | |||   |||||||||||||||| ||||||||||||||||    
T  13604867 ttttcaacttattttcataagctcttcaagataacttatgaaaacagcttaaagtttatatgaaaaca 13604934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 271
Target Start/End: Complemental strand, 14295519 - 14295480
Alignment:
Q  232 gaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  14295519 gaaaacagcttatagcttatatgaaaacagtttgacttta 14295480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 16945001 - 16945072
Alignment:
Q  194 ttttcagcttattttcataagctctataggatggtta-tgaaaacagcttatagtttatatgaaaacaattt 264  Q
    |||||||||||||| | ||||||||  ||||| |||| |||||| ||||||||| || ||||||||||||||    
T  16945001 ttttcagcttatttacttaagctcttcaggatagttaatgaaaatagcttatagcttctatgaaaacaattt 16945072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 18857453 - 18857496
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||| |||||  |||||||||||||||||    
T  18857453 ttatgaaaacagcttatagattatagaaaaacaatttgacttta 18857496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 269
Target Start/End: Complemental strand, 32172708 - 32172629
Alignment:
Q  191 ccattttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    ||||||||||||||||| ||| || |||  | ||| | ||||||||||||||||||| ||||||| |||||| |||||||    
T  32172708 ccattttcagcttatttccattagttcttcatgatagcttatgaaaacagcttatagcttatatgtaaacaacttgactt 32172629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 38047908 - 38047951
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||    
T  38047908 ttatgaaaacagcatatagtatatatgaaaataatttgacttta 38047951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 3237143 - 3237093
Alignment:
Q  196 ttcagcttattttcataagctctataggat-ggttatgaaaacagcttata 245  Q
    |||||| |||||||||||||||| |||||| | ||||||||||||||||||    
T  3237143 ttcagcatattttcataagctctttaggatagcttatgaaaacagcttata 3237093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 8985713 - 8985635
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||| ||| ||||||||||||||||| | ||||||||| |||||  |  ||||||||||| | ||||||||||    
T  8985713 ttttcagcttctttccataagctctataggatagcttatgaaaatagcttgcaaattatatgaaaatagtttgacttta 8985635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 12425623 - 12425545
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||| |||||||||||||| |||  | ||| | || |||||||||||||||| ||||| ||||||||||| ||||||    
T  12425623 ttttcaacttattttcataagttctccaagatagcttgtgaaaacagcttatagcttatacgaaaacaatttaacttta 12425545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 13244535 - 13244577
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||    
T  13244535 ttatgaaaacaacttatagtttatacgaaaacaagttgacttt 13244577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 271
Target Start/End: Original strand, 31030144 - 31030226
Alignment:
Q  190 tccattttcagcttattttcataagctctatagga-tggttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||||||| ||||||||||  ||||  | ||| ||||||  ||||||| |||||||| ||||| |||||||||    
T  31030144 tccattttcagcttatttccataagctctccaggacagcttaggaaaactacttatagcttatatgataacaacttgacttta 31030226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 7319457 - 7319380
Alignment:
Q  195 tttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||| ||||| |||  | ||| | ||| |||||||| |||||| ||||||||||||||||| ||||||    
T  7319457 tttcagcttatttttataagttctccaagatagcttacgaaaacagtttatagcttatatgaaaacaatttaacttta 7319380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 35550967 - 35550930
Alignment:
Q  226 ggttatgaaaacagcttatagtttatatgaaaacaatt 263  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  35550967 ggttataaaaacagcttatagtttatatgaaaataatt 35550930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 39105517 - 39105440
Alignment:
Q  193 attttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    ||||| |||||||||||||||| |||  | ||| | |||||||||||| |||||| ||||| ||||||||||| ||||    
T  39105517 atttttagcttattttcataagttctccaagatagcttatgaaaacagattatagcttatacgaaaacaatttaactt 39105440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 2569748 - 2569780
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaaca 260  Q
    ||||||||||||||||||| |||||||||||||    
T  2569748 ttatgaaaacagcttatagattatatgaaaaca 2569780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 11473136 - 11473172
Alignment:
Q  233 aaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  11473136 aaaacatcttatagtttatatgaaaataatttgactt 11473172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 11707107 - 11707055
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttata 245  Q
    ||||||||||||||||| |||||||| | ||| | ||||||||||||||||||    
T  11707107 ttttcagcttattttcaaaagctctacaagatagcttatgaaaacagcttata 11707055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 16889787 - 16889711
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    ||||||| |||||| ||||| |||| ||| || | ||||||||||||||||||| || ||| |||||| ||||||||    
T  16889787 ttttcagattatttccataaactctctagcatagcttatgaaaacagcttatagcttctataaaaacagtttgactt 16889711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 19369330 - 19369298
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaaca 260  Q
    |||||||| ||||||||||||||||||||||||    
T  19369330 ttatgaaaccagcttatagtttatatgaaaaca 19369298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 21768250 - 21768282
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaaca 260  Q
    |||||||||||||||| ||||||||||||||||    
T  21768250 ttatgaaaacagcttaaagtttatatgaaaaca 21768282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 26209466 - 26209510
Alignment:
Q  228 ttatgaaaacagcttatagtttata-tgaaaacaatttgacttta 271  Q
    ||||||||||||||||||| ||||| ||||||||||| |||||||    
T  26209466 ttatgaaaacagcttatagcttatattgaaaacaattggacttta 26209510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 27593 - 27550
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  27593 ttatgaaaacaacttatagtttatatgaaaacaatttgacttta 27550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 8062577 - 8062499
Alignment:
Q  193 attttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    |||| |||||||||||||||| |||| || ||| | |||||| |||| ||||||| |||||||||||||||||||||||    
T  8062577 atttccagcttattttcataaactctctaagatagcttatgagaacatcttatagcttatatgaaaacaatttgacttt 8062499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 12361209 - 12361168
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  12361209 ttatgaaaacagcttatagcttatatgaaaacaatttgactt 12361168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 30013271 - 30013194
Alignment:
Q  193 attttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    ||||||||||||||| ||| || |||| ||||| | ||||||||||||||||||| ||||||| ||||| ||||||||    
T  30013271 attttcagcttatttccattagttctacaggatagcttatgaaaacagcttatagcttatatggaaacagtttgactt 30013194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 271
Target Start/End: Original strand, 6509320 - 6509399
Alignment:
Q  193 attttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||| |||||||  |||||||||  ||||| | ||||||||||||||||||| |||||| || ||||||||||||||    
T  6509320 attttcaccttatttcaataagctctccaggatagcttatgaaaacagcttatagcttatataaatacaatttgacttta 6509399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 7646030 - 7645955
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgact 268  Q
    |||||||||||||| |||||||| || ||| | | ||||||||||| ||||||| ||| |||||||||||||||||    
T  7646030 ttttcagcttatttccataagctttacaggttagcttatgaaaacaacttatagcttacatgaaaacaatttgact 7645955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 10076329 - 10076371
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  10076329 ttatgcaaacagcttataatttatatgaaaacaatttgacttt 10076371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 26284813 - 26284891
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||||||| || |||||   ||| ||||||| ||| || |||||||||||||| ||||||||||    
T  26284813 ttttcagcttattttcataagctatacaggataacttacgaaaacaacttgtactttatatgaaaacagtttgacttta 26284891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 31862545 - 31862467
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||||||||| ||||||   ||||||||||| ||||||| ||||| || || | ||||||||||    
T  31862545 ttttcagcttattttcataagctctctaggataacttatgaaaacatcttatagcttatacgagaatagtttgacttta 31862467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 43704431 - 43704473
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    ||||||||||| ||||||||||||||||||||| |||||||||    
T  43704431 ttatgaaaacaacttatagtttatatgaaaacagtttgacttt 43704473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 1470907 - 1470952
Alignment:
Q  226 ggttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||||| ||||||||||  ||||||||||||    
T  1470907 ggttatgaaaacagcttatagcttatatgaaagtaatttgacttta 1470952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 8060722 - 8060669
Alignment:
Q  193 attttcagcttattttcataagctctatagga-tggttatgaaaacagcttata 245  Q
    ||||||||||||||| |||||||||| ||||| || ||||||||||||||||||    
T  8060722 attttcagcttatttccataagctctctaggattgcttatgaaaacagcttata 8060669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 10075574 - 10075647
Alignment:
Q  199 agcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||||||||| |||||| | ||||||||| ||||||||  |||||| |||| | ||||||||||    
T  10075574 agcttattttcataagctctctaggatagcttatgaaaatagcttataacttatataaaaatagtttgacttta 10075647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 787159 - 787202
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||| |||||| |||||||| |||||||||||||||    
T  787159 ttatgaaaacagtttatagcttatatgataacaatttgacttta 787202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 11415203 - 11415128
Alignment:
Q  197 tcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||| || |||| |||||| | ||||||||||||| ||||  |||||| |||| ||||||||||||    
T  11415203 tcagcttattttcacaaactctctaggatagcttatgaaaacagcgtataacttatataaaaataatttgacttta 11415128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 13459697 - 13459638
Alignment:
Q  194 ttttcagcttattttcataagctctataggatg-gttatgaaaacagcttatagtttata 252  Q
    |||||||| |||||||||||||||| |||||||  ||||||||||| ||||||| |||||    
T  13459697 ttttcagcctattttcataagctctgtaggatgatttatgaaaacaacttatagcttata 13459638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 34770909 - 34770866
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||||    
T  34770909 ttatgaaaacaacttatagcttaaatgaaaacaatttgacttta 34770866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 266
Target Start/End: Original strand, 1640404 - 1640442
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttga 266  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  1640404 ttatgaaaacagcttatagtttatcagaaaacaatttga 1640442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 4558842 - 4558772
Alignment:
Q  202 ttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||| |||||||||| |||||| | ||||| |||||||||||||  |||||||||| ||||| ||||||    
T  4558842 ttatttccataagctctctaggatagcttatggaaacagcttatagcatatatgaaaataatttaacttta 4558772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 271
Target Start/End: Original strand, 7878548 - 7878582
Alignment:
Q  237 cagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||| ||||||||||||||||||||||||    
T  7878548 cagcttatagcttatatgaaaacaatttgacttta 7878582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 9700017 - 9699979
Alignment:
Q  229 tatgaaaacagcttatagtttatatgaaaacaatttgac 267  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  9700017 tatgaaaacagcttataatttatttgaaaacaatttgac 9699979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 27028884 - 27028830
Alignment:
Q  193 attttcagcttattttcataagctctataggat-ggttatgaaaacagcttatag 246  Q
    ||||||||||||||||||||||||||  | ||| | |||||||||||||||||||    
T  27028884 attttcagcttattttcataagctctccaagatagcttatgaaaacagcttatag 27028830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 271
Target Start/End: Complemental strand, 29699305 - 29699228
Alignment:
Q  193 attttcagcttattttcataagctctataggatggttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||| |||||||||||||||| |||   | |||||||||||||||  ||| |||| |||| ||||||||||    
T  29699305 attttcagcttaatttcataagctctatacgataact-tgaaaacagcttataacttagatgacaacattttgacttta 29699228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 45071214 - 45071176
Alignment:
Q  233 aaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  45071214 aaaacagcttatagcttatataaaaacaatttgacttta 45071176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 9834842 - 9834879
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttg 265  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  9834842 ttatgaaaacaacttatagcttatatgaaaacaatttg 9834879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 30389151 - 30389082
Alignment:
Q  194 ttttcagcttattttcataagctctatagg-atggttatgaaaacagcttatagtttatatgaaaacaat 262  Q
    ||||||||||||||||||||| ||| |||| | | ||||||||||||| ||||| |||||| ||| ||||    
T  30389151 ttttcagcttattttcataagttctctaggaaagcttatgaaaacagcgtatagcttatataaaagcaat 30389082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 2107382 - 2107422
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgact 268  Q
    ||||||||||||  |||||||||| ||||||||||||||||    
T  2107382 ttatgaaaacaggctatagtttatgtgaaaacaatttgact 2107422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 13561368 - 13561408
Alignment:
Q  231 tgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||  ||||| |||||||||||||||||||||||||    
T  13561368 tgaaaacaagttataatttatatgaaaacaatttgacttta 13561408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 30277263 - 30277315
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttata 245  Q
    |||||||||||||| ||||| |||| |||||| | ||||||||||||||||||    
T  30277263 ttttcagcttatttccataaactctctaggatagcttatgaaaacagcttata 30277315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 31705137 - 31705073
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaa 257  Q
    |||||||||||||| ||||| ||||  ||||  | ||||||||||||||||||| ||||||||||    
T  31705137 ttttcagcttatttccataaactctcaaggacagcttatgaaaacagcttatagcttatatgaaa 31705073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 38874663 - 38874623
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgact 268  Q
    |||||||||||||||| || ||||||||||| |||||||||    
T  38874663 ttatgaaaacagcttagagcttatatgaaaagaatttgact 38874623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 41336698 - 41336738
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgact 268  Q
    |||||||||||  || |||||||||||||||||||||||||    
T  41336698 ttatgaaaacaagttctagtttatatgaaaacaatttgact 41336738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 49219191 - 49219113
Alignment:
Q  194 ttttcagcttattttcataagctctataggatggtt-atgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||| ||||| |||| || ||| ||| ||||||||| ||||||| ||||||||||| ||||||||||||    
T  49219191 ttttcagcttatttccataatctctttaagatagtttatgaaaacaacttatagcttatatgaaaataatttgacttta 49219113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 2900390 - 2900327
Alignment:
Q  196 ttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaa 258  Q
    ||||||||||||| |||| |||| || ||| | || ||||||||||||||||||||||||||||    
T  2900390 ttcagcttatttttataatctctctatgatagcttgtgaaaacagcttatagtttatatgaaaa 2900327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 6927546 - 6927589
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||    
T  6927546 ttatgaaaacaacttatagtttacatgaaaacaatttaacttta 6927589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 8130191 - 8130148
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||| |||||| ||||||||||| ||||||||||||    
T  8130191 ttatgaaaacagtttatagcttatatgaaaataatttgacttta 8130148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 24091480 - 24091437
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||| |||||| ||||||||||| ||||||||||||    
T  24091480 ttatgaaaacagtttatagcttatatgaaaataatttgacttta 24091437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 40174580 - 40174537
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||| || |||||||||||||| ||||||    
T  40174580 ttatgaaaacagcttatagcttttatgaaaacaatttaacttta 40174537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 271
Target Start/End: Original strand, 42321936 - 42321975
Alignment:
Q  232 gaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  42321936 gaaaacaacttataatttatatgaaaacaatttgacttta 42321975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 53626793 - 53626750
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||||    
T  53626793 ttatgaaaacagcttatagcttatatgaaaacattttgaattta 53626750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 6978980 - 6979055
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    |||||||||||||||||||| |||| |||||||| |||| |||||| |||||||   |||| ||||||||| ||||||    
T  6978980 ttttcagcttattttcataaactctttaggatggcttataaaaacaacttatag--catataaaaacaattggacttt 6979055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 10192335 - 10192258
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||| |||||||||||| |||||  ||||| | || |||||||| ||||||  ||||||||||||||||||||||||    
T  10192335 ttttcaacttattttcata-gctctccaggatagcttttgaaaacaacttataacttatatgaaaacaatttgacttta 10192258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 24929545 - 24929467
Alignment:
Q  194 ttttcagcttattttcataagctctataggatggtt-atgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||| |||||||||| ||| |  ||| ||||||||| ||||||| || |||||||||| || |||||||    
T  24929545 ttttcagcttatttccataagctctctagtagagtttatgaaaacaacttatagcttttatgaaaacagttagacttta 24929467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 258
Target Start/End: Complemental strand, 10365788 - 10365759
Alignment:
Q  229 tatgaaaacagcttatagtttatatgaaaa 258  Q
    ||||||||||||||||||||||||||||||    
T  10365788 tatgaaaacagcttatagtttatatgaaaa 10365759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 13949903 - 13949940
Alignment:
Q  234 aaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  13949903 aaacaacttatagcttatatgaaaacaatttgacttta 13949940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 21952968 - 21952935
Alignment:
Q  238 agcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||| ||||||||||||||||||||||||    
T  21952968 agcttatagcttatatgaaaacaatttgacttta 21952935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 30207589 - 30207662
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttga 266  Q
    |||||||||||||| ||||| |||| || | | | ||||||||||| ||||||| ||||||||||||| |||||    
T  30207589 ttttcagcttatttccataatctctctaaggtagcttatgaaaacaacttatagcttatatgaaaacagtttga 30207662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 41097296 - 41097337
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    ||||||||||||||||||| | ||||||||||| ||||||||    
T  41097296 ttatgaaaacagcttataggtaatatgaaaacagtttgactt 41097337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 45128328 - 45128401
Alignment:
Q  194 ttttcagcttattttcataagctctatagga-tggttatgaaaacagcttatagtttatatgaaaacaatttga 266  Q
    |||||||||||||| |||||||| |||||||  | |||||||||||  |||||| |||||||| || |||||||    
T  45128328 ttttcagcttatttccataagctttataggacagtttatgaaaacaatttatagcttatatgagaataatttga 45128401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 7694028 - 7694104
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    |||||||||||||| ||||| ||||  |||||   ||||||||||||||||||| |||||  |||||| ||||||||    
T  7694028 ttttcagcttatttccataaactctccaggataacttatgaaaacagcttatagcttatacaaaaacagtttgactt 7694104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 18630722 - 18630654
Alignment:
Q  204 attttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||| | |||| | || |||||||| ||||||| |||||||||||| | |||||||||    
T  18630722 attttcataagctctgttggatagcttgtgaaaacaacttatagcttatatgaaaaccaattgacttta 18630654  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 35507474 - 35507534
Alignment:
Q  193 attttcagcttattttcataagctctataggatggt-tatgaaaacagcttatagtttata 252  Q
    ||||| |||||| ||||||||||||| |||||| || |||||||||| ||||||| |||||    
T  35507474 atttttagcttactttcataagctctttaggatagtgtatgaaaacaacttatagcttata 35507534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 35571650 - 35571718
Alignment:
Q  195 tttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaat 262  Q
    ||||| |||||||||| ||| ||| || ||| | ||||||||||||||||||| ||||| |||||||||    
T  35571650 tttcaacttattttcacaagttctctaagatagcttatgaaaacagcttatagcttatacgaaaacaat 35571718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 36048582 - 36048518
Alignment:
Q  197 tcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaaca 260  Q
    ||||||||||| |||||||||| || ||| | || |||||| ||||||||| |||||||||||||    
T  36048582 tcagcttatttccataagctctctaagatagcttttgaaaatagcttatagcttatatgaaaaca 36048518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 36460603 - 36460571
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaaca 260  Q
    ||||||||||||||||||| |||||||||||||    
T  36460603 ttatgaaaacagcttatagcttatatgaaaaca 36460571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 47800675 - 47800623
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttata 245  Q
    |||||||||||||||||||||||||  | ||| | ||||||||||||||||||    
T  47800675 ttttcagcttattttcataagctcttcaagatagcttatgaaaacagcttata 47800623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 54325093 - 54325133
Alignment:
Q  231 tgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||| ||||||||| ||||||||||||| ||||||||||    
T  54325093 tgaaaatagcttatagcttatatgaaaacagtttgacttta 54325133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 55870262 - 55870334
Alignment:
Q  103 gtttgaattgacttgtttaaatttatctaatgaaataatcatttgcgagactgtttgagatagtttataaaaa 175  Q
    ||||| ||| |||| ||| | |||||||||||| |||| |||||| |||||| |||||||||| |||| ||||    
T  55870262 gtttggattaacttatttgagtttatctaatgacataaacatttgtgagactctttgagatagcttatgaaaa 55870334  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 33306741 - 33306814
Alignment:
Q  194 ttttcagcttattttcataagctctataggatggtt-atgaaaacagcttatagtttatatgaaaacaatttga 266  Q
    ||||| ||||||||| |||| |||||||| || ||| ||||||| ||||||||| |||||||||||||||||||    
T  33306741 ttttcggcttattttaataatctctatagaattgtttatgaaaatagcttatagcttatatgaaaacaatttga 33306814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 271
Target Start/End: Complemental strand, 23315676 - 23315600
Alignment:
Q  196 ttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||| |||||||||| ||| || | ||||| ||||| |||||||  |||||||||||||||||||||||    
T  23315676 ttcagcttatttccataagctctttagaatagcttatggaaacatcttatagcctatatgaaaacaatttgacttta 23315600  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 20502086 - 20502153
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaaca 260  Q
    ||||||||||||| |||||||||||  ||||| | |||||||||||||||||||  ||||||||||||    
T  20502086 ttttcagcttattctcataagctcttcaggatagcttatgaaaacagcttatagcgtatatgaaaaca 20502153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 263
Target Start/End: Original strand, 20874357 - 20874392
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatt 263  Q
    ||||||||||||||||||||||||||||||||||||    
T  20874357 ttatgaaaacagcttatagtttatatgaaaacaatt 20874392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 36783387 - 36783430
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||| |||||||||||||||||||||| ||||||    
T  36783387 ttatgaaaacagctaatagtttatatgaaaacaattttacttta 36783430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 24887301 - 24887379
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||  ||||||||||  ||||| | ||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  24887301 ttttcagcttattcccataagctctccaggatagcttatgaaaacagcttttagcttatatgaatacagtttgacttta 24887379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 25453877 - 25453955
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||||||| |  ||||| | ||||||||| || |||||| ||||| ||||||| ||||||||||    
T  25453877 ttttcagcttattttcataagctttccaggatagtttatgaaaataggttataggttatacgaaaacagtttgacttta 25453955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 38462333 - 38462255
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||||||||||| |||||||| | | |||| | |||||||||||| ||||||  |||||||||||| ||||||||||    
T  38462333 ttttcagcttatttccataagctatcttggatagcttatgaaaacagtttatagcatatatgaaaacagtttgacttta 38462255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 2201143 - 2201103
Alignment:
Q  230 atgaaaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  2201143 atgaaaacagcttatagcttatatgaaaacagtttgacttt 2201103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 45432957 - 45433033
Alignment:
Q  194 ttttcagcttattttcataagctctataggatg-gttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    |||||||||||||| ||||||||||| ||||||  || ||||||||  |||||| | ||||||||||||||| ||||    
T  45432957 ttttcagcttatttccataagctctacaggatgacttgtgaaaacaatttatagctcatatgaaaacaatttaactt 45433033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 271
Target Start/End: Original strand, 3467445 - 3467484
Alignment:
Q  232 gaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  3467445 gaaaacaacttatagtctatatgaaaacaatttgacttta 3467484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 33405220 - 33405263
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||| |||||||||||||| || ||||||    
T  33405220 ttatgaaaacagcttatagcttatatgaaaacaaattaacttta 33405263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 271
Target Start/End: Complemental strand, 52619056 - 52618977
Alignment:
Q  193 attttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||| |||||||||| |||||||  | ||| | || |||||||||||||||  ||||||||||||||||| ||||||    
T  52619056 attttcaccttattttcacaagctcttcaagatagcttgtgaaaacagcttataacttatatgaaaacaatttaacttta 52618977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 2318661 - 2318623
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttga 266  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  2318661 ttataaaaacaacttatagtttatatgaaaacaatttga 2318623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 21367719 - 21367641
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||||||| |||  | ||| | ||||||||||| ||||||  ||||| ||||||||||| ||||||    
T  21367719 ttttcagcttattttcataagttctccaagatagcttatgaaaacaacttatacattatacgaaaacaatttaacttta 21367641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 32064491 - 32064414
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||||| |||||||||||||||||| |||||| | ||||||| ||| | |||||||| ||| |||| ||||||||||||    
T  32064491 ttttcaacttattttcataagctctttaggatagtttatgaacacaacatatagttt-tataaaaataatttgacttta 32064414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 33674710 - 33674752
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    ||||||||||||||||||||||||||| ||| ||||| |||||    
T  33674710 ttatgaaaacagcttatagtttatatgcaaaaaatttaacttt 33674752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 1217818 - 1217894
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaatttgactt 269  Q
    |||||| |||| ||||||||| |||  ||||| | ||||||||||||||||||  ||| ||||||||||||| ||||    
T  1217818 ttttcatcttactttcataagttctcaaggatagcttatgaaaacagcttataacttacatgaaaacaatttaactt 1217894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 2865718 - 2865754
Alignment:
Q  234 aaacagcttatagtttatatgaaaacaatttgacttt 270  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  2865718 aaacaacttataggttatatgaaaacaatttgacttt 2865754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 22214677 - 22214745
Alignment:
Q  194 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttatagtttatatgaaaacaa 261  Q
    |||||||||||||| | |||  ||| |||||| | ||||||||||| ||||||| ||||||||||||||    
T  22214677 ttttcagcttatttccgtaatgtctctaggatagcttatgaaaacaacttataggttatatgaaaacaa 22214745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 34924556 - 34924612
Alignment:
Q  194 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttatagttt 249  Q
    ||||||||||||||||||||||||| || ||| | ||||||||| |||| |||||||    
T  34924556 ttttcagcttattttcataagctctctaagatagcttatgaaaatagctcatagttt 34924612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 47319296 - 47319348
Alignment:
Q  201 cttattttcataagctctataggatgg-ttatgaaaacagcttatagtttata 252  Q
    |||||||||||||||||| || ||| | |||||| ||||||||||||||||||    
T  47319296 cttattttcataagctctctaagatagattatgacaacagcttatagtttata 47319348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 52005 - 52046
Alignment:
Q  230 atgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  52005 atgaaaacagcttatagcttatatgaaaacaatttcacttta 52046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 4276 - 4319
Alignment:
Q  228 ttatgaaaacagcttatagtttatatgaaaacaatttgacttta 271  Q
    |||| |||||||||||||||||||||||||||  ||||||||||    
T  4276 ttattaaaacagcttatagtttatatgaaaacggtttgacttta 4319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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