View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2761_high_11 (Length: 503)
Name: NF2761_high_11
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 13 - 484
Target Start/End: Complemental strand, 1866032 - 1865560
Alignment:
| Q |
13 |
gagatgaactactacctgcattgattaattcaaactatactttgtaactaagaatacatttttatatgtaacaattgaaaaatgggtcacattaatccac |
112 |
Q |
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| T |
1866032 |
gagatgaactactacctgcattgattaattcaaactatactttgtaactaagaatacatttttatatgtaacaattgaaaaatgggtcacattaatccac |
1865933 |
T |
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| Q |
113 |
ataaacataagagagaatacatacctaaaaacaaagaagcatgagaagactcttctggaaagctaaaatttctagacaatagttcattagaagaagtctt |
212 |
Q |
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| T |
1865932 |
ataaacataagagagaatacatacctaaaaacaaagaagcatgagaagactcttctggaaagctaaaatttctagacaatagttcattagaagaagtctt |
1865833 |
T |
|
| Q |
213 |
tgtatgatccagaattgctccattcatagaacgtgagttaggttcaacattagtgattggtgtaacagatgcatctccgatatttggattaa-ccccgca |
311 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
1865832 |
tgtatgatccagaattgctccattcacagaacgtgagttaggttcaacattagtgattggtgtaacatatgcatctccgatatttggattaacccccgca |
1865733 |
T |
|
| Q |
312 |
acttttccatcagcaccaaacatgagaggagaagaacttgaatatctaggttttgatatgtttgccccccaactgattccttgttgtagactcatgtttg |
411 |
Q |
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| T |
1865732 |
acttttccatcagcaccaaacatgagaggagaagaacttgaatatctaggttttgatatgtttgccccccaactgattccttgttgtagactcatgtttg |
1865633 |
T |
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| Q |
412 |
tattttgagtattataaggcacacttgaaatatctccatgaaaagacatatcaataataccagatgatgaccc |
484 |
Q |
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| T |
1865632 |
tattttgagtattataaggcacacttgaaatatctccatgaaaagacatatcaataataccagatgatgaccc |
1865560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 283 - 481
Target Start/End: Complemental strand, 1865510 - 1865308
Alignment:
| Q |
283 |
gcatctccgatatttggattaaccccg-caacttttccatcagcaccaaacatgagaggagaagaacttgaatatctaggttttgatatgtttgcccccc |
381 |
Q |
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|||||||||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1865510 |
gcatctccgatatttggattaacctctacagcttttccatcaatgccaaacatgagaggagaagaacttgaatatccaggttttgatatgtttgcccccc |
1865411 |
T |
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| Q |
382 |
aactgattccttgttgtagactcatgtttgtattttgagtattataa---ggcacacttgaaatatctccatgaaaagacatatcaataataccagatga |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1865410 |
cactgattccttgttgtagactcatgtttgtattttgagtattataagtcgacacatttgaaatatctccatgaaaagacatatcaataataccggatga |
1865311 |
T |
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| Q |
479 |
tga |
481 |
Q |
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||| |
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| T |
1865310 |
tga |
1865308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 310 - 423
Target Start/End: Original strand, 35440700 - 35440813
Alignment:
| Q |
310 |
caacttttccatcagcaccaaacatgagaggagaagaacttgaatatctaggttttgatatgtttgccccccaactgattccttgttgtagactcatgtt |
409 |
Q |
| |
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|||| ||||||| ||||||||||||| |||||||| |||||||||||| |||||||||| |||| ||| | | ||||||||||||| | || |||||| |
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| T |
35440700 |
caacatttccatgagcaccaaacatgtgaggagaataacttgaatatccaggttttgatgtgttcatcccaccattgattccttgttgcacacccatgtt |
35440799 |
T |
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| Q |
410 |
tgtattttgagtat |
423 |
Q |
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||| || ||||||| |
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| T |
35440800 |
tgtgttatgagtat |
35440813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 354
Target Start/End: Original strand, 35440916 - 35440960
Alignment:
| Q |
310 |
caacttttccatcagcaccaaacatgagaggagaagaacttgaat |
354 |
Q |
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| T |
35440916 |
caacttttccatcagcaccaaacatgtgaggagaaaaacttgaat |
35440960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 481
Target Start/End: Original strand, 51575275 - 51575371
Alignment:
| Q |
385 |
tgattccttgttgtagactcatgtttgtattttgagtattataaggcacacttgaaatatctccatgaaaagacatatcaataataccagatgatga |
481 |
Q |
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||||| |||| ||||||| |||||||| || ||||||||||||||| ||||||||||| ||| || ||||| ||||| |||||| ||||||| |
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| T |
51575275 |
tgatttcttggtgtagacccatgtttgagttccgagtattataaggcatgcttgaaatatcaccacgaggagacacatcaaccataccaaatgatga |
51575371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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