View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2761_high_12 (Length: 447)
Name: NF2761_high_12
Description: NF2761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2761_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 887007 - 887094
Alignment:
| Q |
36 |
tgtttgatagtggaaccaccgtttcatacctcaattctaaagactataaagttcttctcaatcttgtgagcaaaaatcatataaatta |
123 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
887007 |
tgtttgatagtggaaccaccctttcatacctcaattctaaagactataaagttcttctcgatcttgtgagcaaaaatcatagaaatta |
887094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 31875280 - 31875186
Alignment:
| Q |
121 |
ttattatatatcaatttcatcgtcttatttatttcctataataacgttttcagttcatagtggttattgatcaaatattaattaatatttcagataaa |
218 |
Q |
| |
|
|||||||||||||||||||| || | |||||||| |||||| | ||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
31875280 |
ttattatatatcaatttcattgtttcatttatttactataaca---ttttcagttcatagtggttgttgatcaaatattaattaatattttagataaa |
31875186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 887102 - 887159
Alignment:
| Q |
161 |
ataacgttttcagttcatagtggttattgatcaaatattaattaatatttcagataaa |
218 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| |
|
|
| T |
887102 |
ataacgttttcagttcatagtggttgttgatcaaatattaattgatattttagataaa |
887159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 31881715 - 31881676
Alignment:
| Q |
177 |
atagtggttattgatcaaatattaattaatatttcagata |
216 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31881715 |
atagtggttgttgatcaaatattaattaatatttcagata |
31881676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 314
Target Start/End: Complemental strand, 31881616 - 31881578
Alignment:
| Q |
276 |
ttgttggaagggtgacaaaccatttaactctatagacga |
314 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31881616 |
ttgttggaagggtgacaaaccatttaagtctatagacga |
31881578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 29146623 - 29146570
Alignment:
| Q |
272 |
atatttgttggaagggtgacaaaccatttaactctatagacgagatcatcagca |
325 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
29146623 |
atatttgttgggagggtcacaaaccatttacgtctatagacgaggtcatcagca |
29146570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University